Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6766 | 3' | -56.4 | NC_001875.2 | + | 42696 | 0.69 | 0.720833 |
Target: 5'- aCCGCGcggCGCGCGGUUUCguacGCAa -3' miRNA: 3'- gGGCGCa--GCGCGUCAAAGagguCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 23812 | 0.69 | 0.710783 |
Target: 5'- cUCCGCGgcgucgggCGCGCcGUgUCUCUGGCGg -3' miRNA: 3'- -GGGCGCa-------GCGCGuCAaAGAGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 110158 | 0.69 | 0.690488 |
Target: 5'- aCCGCGUCGCGCucg-UCgggCGGCGUc -3' miRNA: 3'- gGGCGCAGCGCGucaaAGag-GUCGUA- -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 84644 | 0.7 | 0.669995 |
Target: 5'- aCCCGCG-CGUGUg----CUCCAGCAg -3' miRNA: 3'- -GGGCGCaGCGCGucaaaGAGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 93105 | 0.7 | 0.669995 |
Target: 5'- aCCCGC-UUGUGguGcg-CUCCAGCAa -3' miRNA: 3'- -GGGCGcAGCGCguCaaaGAGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 108508 | 0.7 | 0.649376 |
Target: 5'- aCCCGcCGUCGUGCuccUUUCcgcCCAGCAa -3' miRNA: 3'- -GGGC-GCAGCGCGuc-AAAGa--GGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 5510 | 0.7 | 0.6287 |
Target: 5'- aCCgGCGcacgCGCGCAGUUUacgCCGGCc- -3' miRNA: 3'- -GGgCGCa---GCGCGUCAAAga-GGUCGua -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 104370 | 0.72 | 0.516759 |
Target: 5'- gCCUaaaGCGUCGCGCAccccaCUCCAGCGa -3' miRNA: 3'- -GGG---CGCAGCGCGUcaaa-GAGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 89153 | 0.72 | 0.516759 |
Target: 5'- aCCgCGCGcCGCGCGGUUUCgugcacgCUGGCGc -3' miRNA: 3'- -GG-GCGCaGCGCGUCAAAGa------GGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 50843 | 0.73 | 0.468412 |
Target: 5'- -aCGCGUCGCGCGccUUUUUCAGCAg -3' miRNA: 3'- ggGCGCAGCGCGUcaAAGAGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 124455 | 0.75 | 0.38777 |
Target: 5'- aCCGCGUCGCGCAaccgcGUggccgaUCCGGCGg -3' miRNA: 3'- gGGCGCAGCGCGU-----CAaag---AGGUCGUa -5' |
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6766 | 3' | -56.4 | NC_001875.2 | + | 92585 | 1.08 | 0.002484 |
Target: 5'- cCCCGCGUCGCGCAGUUUCUCCAGCAUg -3' miRNA: 3'- -GGGCGCAGCGCGUCAAAGAGGUCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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