Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6766 | 5' | -51.8 | NC_001875.2 | + | 62895 | 0.68 | 0.952625 |
Target: 5'- ---cGCCGGAAGACa--ACGACG-GGg -3' miRNA: 3'- cuuaCGGCCUUUUGggcUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 64724 | 0.68 | 0.948387 |
Target: 5'- ---cGCUGGccAAGgCgGGCGACGUGGg -3' miRNA: 3'- cuuaCGGCCu-UUUgGgCUGCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 66310 | 0.67 | 0.967216 |
Target: 5'- ---gGCCGGc-GAgUUGAUGGCGUGGg -3' miRNA: 3'- cuuaCGGCCuuUUgGGCUGCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 68596 | 0.7 | 0.905563 |
Target: 5'- ---gGCCGccGAGCCCGACGcguuUGUGGu -3' miRNA: 3'- cuuaCGGCcuUUUGGGCUGCu---GCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 68997 | 0.75 | 0.696064 |
Target: 5'- gGAGUGCCGcGggGGCaaGcACGugGUGGc -3' miRNA: 3'- -CUUACGGC-CuuUUGggC-UGCugCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 69244 | 0.69 | 0.934201 |
Target: 5'- -uGUGCCGacuuGCCCGACGGCacGGg -3' miRNA: 3'- cuUACGGCcuuuUGGGCUGCUGcaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 82099 | 0.66 | 0.989375 |
Target: 5'- ---gGCCGcaccagcGACUaCGGCGACGUGGa -3' miRNA: 3'- cuuaCGGCcuu----UUGG-GCUGCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 85345 | 0.67 | 0.9703 |
Target: 5'- ---cGCCGc-GAACgCCGACGcCGUGGc -3' miRNA: 3'- cuuaCGGCcuUUUG-GGCUGCuGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 86251 | 0.66 | 0.987929 |
Target: 5'- ---cGCCGGAGucgGGCCCGcuggacuugGCGGCGa-- -3' miRNA: 3'- cuuaCGGCCUU---UUGGGC---------UGCUGCacc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 86680 | 0.66 | 0.989237 |
Target: 5'- cGGUGCUGGAGAcguACCUGgccaguaGCGGCaaGUGGc -3' miRNA: 3'- cUUACGGCCUUU---UGGGC-------UGCUG--CACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 90064 | 0.71 | 0.884712 |
Target: 5'- cGAGUGCCuGGAAAACCUGGacaacccggugacCGACGa-- -3' miRNA: 3'- -CUUACGG-CCUUUUGGGCU-------------GCUGCacc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 90679 | 0.67 | 0.975834 |
Target: 5'- --uUGCugCGGAuGACCuCGACGAUG-GGg -3' miRNA: 3'- cuuACG--GCCUuUUGG-GCUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 91031 | 0.69 | 0.923496 |
Target: 5'- ---gGCCGGAAcGACUgUGugGAUGUGGu -3' miRNA: 3'- cuuaCGGCCUU-UUGG-GCugCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 92619 | 1.11 | 0.005928 |
Target: 5'- cGAAUGCCGGAAAACCCGACGACGUGGc -3' miRNA: 3'- -CUUACGGCCUUUUGGGCUGCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 94688 | 0.76 | 0.643991 |
Target: 5'- cGggUGCUGGA--ACCCGGCGAUGc-- -3' miRNA: 3'- -CuuACGGCCUuuUGGGCUGCUGCacc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 98289 | 0.67 | 0.967216 |
Target: 5'- --uUGCCGaaGAcauAAGCaCCGACGcCGUGGu -3' miRNA: 3'- cuuACGGC--CU---UUUG-GGCUGCuGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 98762 | 0.7 | 0.911789 |
Target: 5'- aAGUGCCcGAcGugCCGGCaaGACGUGGc -3' miRNA: 3'- cUUACGGcCUuUugGGCUG--CUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 102749 | 0.69 | 0.934201 |
Target: 5'- --cUGaaGGAuuggGAACCCGACGAcgcgcCGUGGc -3' miRNA: 3'- cuuACggCCU----UUUGGGCUGCU-----GCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 105885 | 0.67 | 0.97317 |
Target: 5'- ---aGUCGGugcaguACCCGAUGGCG-GGc -3' miRNA: 3'- cuuaCGGCCuuu---UGGGCUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 108874 | 0.66 | 0.982665 |
Target: 5'- ---cGCUGGAAAGCgCGGCGgagGCGUa- -3' miRNA: 3'- cuuaCGGCCUUUUGgGCUGC---UGCAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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