miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 5' -51.8 NC_001875.2 + 333 0.66 0.986166
Target:  5'- cGGAUGCCGGcccccgguuagGAGuuuguaggcuagcACgCCGACGGCGUa- -3'
miRNA:   3'- -CUUACGGCC-----------UUU-------------UG-GGCUGCUGCAcc -5'
6766 5' -51.8 NC_001875.2 + 3077 0.71 0.87081
Target:  5'- ---cGCCGGGGucGCCC-ACGGCGUGc -3'
miRNA:   3'- cuuaCGGCCUUu-UGGGcUGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 12363 0.7 0.917768
Target:  5'- ---cGCC---AAGCCCGACGACGaGGg -3'
miRNA:   3'- cuuaCGGccuUUUGGGCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 12914 0.67 0.975834
Target:  5'- ---cGCCGG----CCCGugGAUGUGc -3'
miRNA:   3'- cuuaCGGCCuuuuGGGCugCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 18189 0.72 0.80394
Target:  5'- cGGUGCCGGcgGGCguaGGCGugGUGGu -3'
miRNA:   3'- cUUACGGCCuuUUGgg-CUGCugCACC- -5'
6766 5' -51.8 NC_001875.2 + 19784 0.68 0.948387
Target:  5'- --cUGCUGGAAgacGACgCGGcCGACGUGa -3'
miRNA:   3'- cuuACGGCCUU---UUGgGCU-GCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 26054 0.72 0.830471
Target:  5'- ---gGCCaaGGAAGACCUGcUGAUGUGGg -3'
miRNA:   3'- cuuaCGG--CCUUUUGGGCuGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 28647 0.67 0.9783
Target:  5'- -cGUGUCGuGGAACguguggaaCGGCGGCGUGGg -3'
miRNA:   3'- cuUACGGCcUUUUGg-------GCUGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 32806 0.66 0.980574
Target:  5'- ---cGCCGGcAAGCUCGGCGaACGg-- -3'
miRNA:   3'- cuuaCGGCCuUUUGGGCUGC-UGCacc -5'
6766 5' -51.8 NC_001875.2 + 33212 0.66 0.982665
Target:  5'- ---cGCCGGGGAaaaaacACgCGGgcucCGACGUGGc -3'
miRNA:   3'- cuuaCGGCCUUU------UGgGCU----GCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 33531 0.67 0.9703
Target:  5'- --uUGCCGGGcgAAACCaCcACGGCGUcGGu -3'
miRNA:   3'- cuuACGGCCU--UUUGG-GcUGCUGCA-CC- -5'
6766 5' -51.8 NC_001875.2 + 33569 0.7 0.892375
Target:  5'- ---cGCCGcGggGcaccauGCCCGagucgGCGACGUGGc -3'
miRNA:   3'- cuuaCGGC-CuuU------UGGGC-----UGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 39253 0.67 0.967216
Target:  5'- -cAUGCUGGAGAAaCUGcGCGACGcGGg -3'
miRNA:   3'- cuUACGGCCUUUUgGGC-UGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 40450 0.66 0.982665
Target:  5'- aGAAcGUgGGcAGcCCCGAgGGCGUGGu -3'
miRNA:   3'- -CUUaCGgCCuUUuGGGCUgCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 43987 0.66 0.986334
Target:  5'- cGAccGCCacGGAcAGCCCGACGGgcgcCGUGc -3'
miRNA:   3'- -CUuaCGG--CCUuUUGGGCUGCU----GCACc -5'
6766 5' -51.8 NC_001875.2 + 49540 0.7 0.910564
Target:  5'- uGGUGCUGGAcuugGGGCCCGACGccagaauuguaGUGGc -3'
miRNA:   3'- cUUACGGCCU----UUUGGGCUGCug---------CACC- -5'
6766 5' -51.8 NC_001875.2 + 52031 0.67 0.967216
Target:  5'- -cAUGCCGGgcAcguucaagcgGCCCGACGACc--- -3'
miRNA:   3'- cuUACGGCCuuU----------UGGGCUGCUGcacc -5'
6766 5' -51.8 NC_001875.2 + 54576 0.66 0.986334
Target:  5'- cGGcgGCCGcuucGCCCGGCGGCGc-- -3'
miRNA:   3'- -CUuaCGGCcuuuUGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 61571 0.67 0.9703
Target:  5'- aGGUGCUGaGu---UCCGACGAgGUGGa -3'
miRNA:   3'- cUUACGGC-CuuuuGGGCUGCUgCACC- -5'
6766 5' -51.8 NC_001875.2 + 62400 0.66 0.986334
Target:  5'- ---gGCCGGcgcgcAAACgCCGGCGucaagcacuucGCGUGGa -3'
miRNA:   3'- cuuaCGGCCu----UUUG-GGCUGC-----------UGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.