miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 5' -51.8 NC_001875.2 + 92619 1.11 0.005928
Target:  5'- cGAAUGCCGGAAAACCCGACGACGUGGc -3'
miRNA:   3'- -CUUACGGCCUUUUGGGCUGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 125460 0.76 0.633511
Target:  5'- -cGUGCCGGGccgcgcgguGCCCGACGACGa-- -3'
miRNA:   3'- cuUACGGCCUuu-------UGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 94688 0.76 0.643991
Target:  5'- cGggUGCUGGA--ACCCGGCGAUGc-- -3'
miRNA:   3'- -CuuACGGCCUuuUGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 68997 0.75 0.696064
Target:  5'- gGAGUGCCGcGggGGCaaGcACGugGUGGc -3'
miRNA:   3'- -CUUACGGC-CuuUUGggC-UGCugCACC- -5'
6766 5' -51.8 NC_001875.2 + 18189 0.72 0.80394
Target:  5'- cGGUGCCGGcgGGCguaGGCGugGUGGu -3'
miRNA:   3'- cUUACGGCCuuUUGgg-CUGCugCACC- -5'
6766 5' -51.8 NC_001875.2 + 111712 0.72 0.80394
Target:  5'- ---cGCUGGAAAuuCCCGcCGACGUGc -3'
miRNA:   3'- cuuaCGGCCUUUu-GGGCuGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 26054 0.72 0.830471
Target:  5'- ---gGCCaaGGAAGACCUGcUGAUGUGGg -3'
miRNA:   3'- cuuaCGG--CCUUUUGGGCuGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 3077 0.71 0.87081
Target:  5'- ---cGCCGGGGucGCCC-ACGGCGUGc -3'
miRNA:   3'- cuuaCGGCCUUu-UGGGcUGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 90064 0.71 0.884712
Target:  5'- cGAGUGCCuGGAAAACCUGGacaacccggugacCGACGa-- -3'
miRNA:   3'- -CUUACGG-CCUUUUGGGCU-------------GCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 128019 0.71 0.88542
Target:  5'- ---cGCCGGcguGCgCCGACGACGgccGGu -3'
miRNA:   3'- cuuaCGGCCuuuUG-GGCUGCUGCa--CC- -5'
6766 5' -51.8 NC_001875.2 + 33569 0.7 0.892375
Target:  5'- ---cGCCGcGggGcaccauGCCCGagucgGCGACGUGGc -3'
miRNA:   3'- cuuaCGGC-CuuU------UGGGC-----UGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 68596 0.7 0.905563
Target:  5'- ---gGCCGccGAGCCCGACGcguuUGUGGu -3'
miRNA:   3'- cuuaCGGCcuUUUGGGCUGCu---GCACC- -5'
6766 5' -51.8 NC_001875.2 + 49540 0.7 0.910564
Target:  5'- uGGUGCUGGAcuugGGGCCCGACGccagaauuguaGUGGc -3'
miRNA:   3'- cUUACGGCCU----UUUGGGCUGCug---------CACC- -5'
6766 5' -51.8 NC_001875.2 + 98762 0.7 0.911789
Target:  5'- aAGUGCCcGAcGugCCGGCaaGACGUGGc -3'
miRNA:   3'- cUUACGGcCUuUugGGCUG--CUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 119003 0.7 0.911789
Target:  5'- ---cGCCaGAu-GCCCGACuACGUGGc -3'
miRNA:   3'- cuuaCGGcCUuuUGGGCUGcUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 12363 0.7 0.917768
Target:  5'- ---cGCC---AAGCCCGACGACGaGGg -3'
miRNA:   3'- cuuaCGGccuUUUGGGCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 91031 0.69 0.923496
Target:  5'- ---gGCCGGAAcGACUgUGugGAUGUGGu -3'
miRNA:   3'- cuuaCGGCCUU-UUGG-GCugCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 69244 0.69 0.934201
Target:  5'- -uGUGCCGacuuGCCCGACGGCacGGg -3'
miRNA:   3'- cuUACGGCcuuuUGGGCUGCUGcaCC- -5'
6766 5' -51.8 NC_001875.2 + 102749 0.69 0.934201
Target:  5'- --cUGaaGGAuuggGAACCCGACGAcgcgcCGUGGc -3'
miRNA:   3'- cuuACggCCU----UUUGGGCUGCU-----GCACC- -5'
6766 5' -51.8 NC_001875.2 + 19784 0.68 0.948387
Target:  5'- --cUGCUGGAAgacGACgCGGcCGACGUGa -3'
miRNA:   3'- cuuACGGCCUU---UUGgGCU-GCUGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.