Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6766 | 5' | -51.8 | NC_001875.2 | + | 333 | 0.66 | 0.986166 |
Target: 5'- cGGAUGCCGGcccccgguuagGAGuuuguaggcuagcACgCCGACGGCGUa- -3' miRNA: 3'- -CUUACGGCC-----------UUU-------------UG-GGCUGCUGCAcc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 33531 | 0.67 | 0.9703 |
Target: 5'- --uUGCCGGGcgAAACCaCcACGGCGUcGGu -3' miRNA: 3'- cuuACGGCCU--UUUGG-GcUGCUGCA-CC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 61571 | 0.67 | 0.9703 |
Target: 5'- aGGUGCUGaGu---UCCGACGAgGUGGa -3' miRNA: 3'- cUUACGGC-CuuuuGGGCUGCUgCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 85345 | 0.67 | 0.9703 |
Target: 5'- ---cGCCGc-GAACgCCGACGcCGUGGc -3' miRNA: 3'- cuuaCGGCcuUUUG-GGCUGCuGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 12914 | 0.67 | 0.975834 |
Target: 5'- ---cGCCGG----CCCGugGAUGUGc -3' miRNA: 3'- cuuaCGGCCuuuuGGGCugCUGCACc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 90679 | 0.67 | 0.975834 |
Target: 5'- --uUGCugCGGAuGACCuCGACGAUG-GGg -3' miRNA: 3'- cuuACG--GCCUuUUGG-GCUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 32806 | 0.66 | 0.980574 |
Target: 5'- ---cGCCGGcAAGCUCGGCGaACGg-- -3' miRNA: 3'- cuuaCGGCCuUUUGGGCUGC-UGCacc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 40450 | 0.66 | 0.982665 |
Target: 5'- aGAAcGUgGGcAGcCCCGAgGGCGUGGu -3' miRNA: 3'- -CUUaCGgCCuUUuGGGCUgCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 111092 | 0.66 | 0.984583 |
Target: 5'- ---cGCCGuGAAAACCUuuuguuGCGGCGUGc -3' miRNA: 3'- cuuaCGGC-CUUUUGGGc-----UGCUGCACc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 66310 | 0.67 | 0.967216 |
Target: 5'- ---gGCCGGc-GAgUUGAUGGCGUGGg -3' miRNA: 3'- cuuaCGGCCuuUUgGGCUGCUGCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 39253 | 0.67 | 0.967216 |
Target: 5'- -cAUGCUGGAGAAaCUGcGCGACGcGGg -3' miRNA: 3'- cuUACGGCCUUUUgGGC-UGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 62895 | 0.68 | 0.952625 |
Target: 5'- ---cGCCGGAAGACa--ACGACG-GGg -3' miRNA: 3'- cuuaCGGCCUUUUGggcUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 18189 | 0.72 | 0.80394 |
Target: 5'- cGGUGCCGGcgGGCguaGGCGugGUGGu -3' miRNA: 3'- cUUACGGCCuuUUGgg-CUGCugCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 111712 | 0.72 | 0.80394 |
Target: 5'- ---cGCUGGAAAuuCCCGcCGACGUGc -3' miRNA: 3'- cuuaCGGCCUUUu-GGGCuGCUGCACc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 90064 | 0.71 | 0.884712 |
Target: 5'- cGAGUGCCuGGAAAACCUGGacaacccggugacCGACGa-- -3' miRNA: 3'- -CUUACGG-CCUUUUGGGCU-------------GCUGCacc -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 68596 | 0.7 | 0.905563 |
Target: 5'- ---gGCCGccGAGCCCGACGcguuUGUGGu -3' miRNA: 3'- cuuaCGGCcuUUUGGGCUGCu---GCACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 49540 | 0.7 | 0.910564 |
Target: 5'- uGGUGCUGGAcuugGGGCCCGACGccagaauuguaGUGGc -3' miRNA: 3'- cUUACGGCCU----UUUGGGCUGCug---------CACC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 12363 | 0.7 | 0.917768 |
Target: 5'- ---cGCC---AAGCCCGACGACGaGGg -3' miRNA: 3'- cuuaCGGccuUUUGGGCUGCUGCaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 69244 | 0.69 | 0.934201 |
Target: 5'- -uGUGCCGacuuGCCCGACGGCacGGg -3' miRNA: 3'- cuUACGGCcuuuUGGGCUGCUGcaCC- -5' |
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6766 | 5' | -51.8 | NC_001875.2 | + | 19784 | 0.68 | 0.948387 |
Target: 5'- --cUGCUGGAAgacGACgCGGcCGACGUGa -3' miRNA: 3'- cuuACGGCCUU---UUGgGCU-GCUGCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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