miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 5' -51.8 NC_001875.2 + 130264 0.68 0.963912
Target:  5'- aGAggGCCGaGAAAAUguaucggucgCCGGCGguuGCGUGGu -3'
miRNA:   3'- -CUuaCGGC-CUUUUG----------GGCUGC---UGCACC- -5'
6766 5' -51.8 NC_001875.2 + 128019 0.71 0.88542
Target:  5'- ---cGCCGGcguGCgCCGACGACGgccGGu -3'
miRNA:   3'- cuuaCGGCCuuuUG-GGCUGCUGCa--CC- -5'
6766 5' -51.8 NC_001875.2 + 125460 0.76 0.633511
Target:  5'- -cGUGCCGGGccgcgcgguGCCCGACGACGa-- -3'
miRNA:   3'- cuUACGGCCUuu-------UGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 123337 0.67 0.975834
Target:  5'- cAGUGCgcggcgcccacaCGGAcggcGCCCGGCGugGUGu -3'
miRNA:   3'- cUUACG------------GCCUuu--UGGGCUGCugCACc -5'
6766 5' -51.8 NC_001875.2 + 119003 0.7 0.911789
Target:  5'- ---cGCCaGAu-GCCCGACuACGUGGc -3'
miRNA:   3'- cuuaCGGcCUuuUGGGCUGcUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 111712 0.72 0.80394
Target:  5'- ---cGCUGGAAAuuCCCGcCGACGUGc -3'
miRNA:   3'- cuuaCGGCCUUUu-GGGCuGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 111092 0.66 0.984583
Target:  5'- ---cGCCGuGAAAACCUuuuguuGCGGCGUGc -3'
miRNA:   3'- cuuaCGGC-CUUUUGGGc-----UGCUGCACc -5'
6766 5' -51.8 NC_001875.2 + 108874 0.66 0.982665
Target:  5'- ---cGCUGGAAAGCgCGGCGgagGCGUa- -3'
miRNA:   3'- cuuaCGGCCUUUUGgGCUGC---UGCAcc -5'
6766 5' -51.8 NC_001875.2 + 105885 0.67 0.97317
Target:  5'- ---aGUCGGugcaguACCCGAUGGCG-GGc -3'
miRNA:   3'- cuuaCGGCCuuu---UGGGCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 102749 0.69 0.934201
Target:  5'- --cUGaaGGAuuggGAACCCGACGAcgcgcCGUGGc -3'
miRNA:   3'- cuuACggCCU----UUUGGGCUGCU-----GCACC- -5'
6766 5' -51.8 NC_001875.2 + 98762 0.7 0.911789
Target:  5'- aAGUGCCcGAcGugCCGGCaaGACGUGGc -3'
miRNA:   3'- cUUACGGcCUuUugGGCUG--CUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 98289 0.67 0.967216
Target:  5'- --uUGCCGaaGAcauAAGCaCCGACGcCGUGGu -3'
miRNA:   3'- cuuACGGC--CU---UUUG-GGCUGCuGCACC- -5'
6766 5' -51.8 NC_001875.2 + 94688 0.76 0.643991
Target:  5'- cGggUGCUGGA--ACCCGGCGAUGc-- -3'
miRNA:   3'- -CuuACGGCCUuuUGGGCUGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 92619 1.11 0.005928
Target:  5'- cGAAUGCCGGAAAACCCGACGACGUGGc -3'
miRNA:   3'- -CUUACGGCCUUUUGGGCUGCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 91031 0.69 0.923496
Target:  5'- ---gGCCGGAAcGACUgUGugGAUGUGGu -3'
miRNA:   3'- cuuaCGGCCUU-UUGG-GCugCUGCACC- -5'
6766 5' -51.8 NC_001875.2 + 90679 0.67 0.975834
Target:  5'- --uUGCugCGGAuGACCuCGACGAUG-GGg -3'
miRNA:   3'- cuuACG--GCCUuUUGG-GCUGCUGCaCC- -5'
6766 5' -51.8 NC_001875.2 + 90064 0.71 0.884712
Target:  5'- cGAGUGCCuGGAAAACCUGGacaacccggugacCGACGa-- -3'
miRNA:   3'- -CUUACGG-CCUUUUGGGCU-------------GCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 86680 0.66 0.989237
Target:  5'- cGGUGCUGGAGAcguACCUGgccaguaGCGGCaaGUGGc -3'
miRNA:   3'- cUUACGGCCUUU---UGGGC-------UGCUG--CACC- -5'
6766 5' -51.8 NC_001875.2 + 86251 0.66 0.987929
Target:  5'- ---cGCCGGAGucgGGCCCGcuggacuugGCGGCGa-- -3'
miRNA:   3'- cuuaCGGCCUU---UUGGGC---------UGCUGCacc -5'
6766 5' -51.8 NC_001875.2 + 85345 0.67 0.9703
Target:  5'- ---cGCCGc-GAACgCCGACGcCGUGGc -3'
miRNA:   3'- cuuaCGGCcuUUUG-GGCUGCuGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.