Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6767 | 5' | -49.7 | NC_001875.2 | + | 13533 | 0.68 | 0.965502 |
Target: 5'- cUUGCaGCcGUUGUU-GCAAGCGCGCc -3' miRNA: 3'- -AACGaCGaCAACGAuCGUUUGUGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 17617 | 0.66 | 0.98804 |
Target: 5'- -aGCUGagcaaGUUGCUGGCcGGACACGg- -3' miRNA: 3'- aaCGACga---CAACGAUCG-UUUGUGUgu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 18548 | 0.66 | 0.984472 |
Target: 5'- gUGCUGCUGg-GCgugGGUgucuuGAGCGCGCu -3' miRNA: 3'- aACGACGACaaCGa--UCG-----UUUGUGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 19111 | 0.66 | 0.98804 |
Target: 5'- gUGUUGCUG-UGCgcGC-GACGCGCc -3' miRNA: 3'- aACGACGACaACGauCGuUUGUGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 23321 | 0.68 | 0.965502 |
Target: 5'- ---gUGCUGUUGCUGGgCGGAaaggaGCACGa -3' miRNA: 3'- aacgACGACAACGAUC-GUUUg----UGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 32739 | 0.67 | 0.972065 |
Target: 5'- gUUGCcgaaGCUGUUuuaaGUUGGCAAGCGCAa- -3' miRNA: 3'- -AACGa---CGACAA----CGAUCGUUUGUGUgu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 34615 | 0.69 | 0.949278 |
Target: 5'- -aGUUGCUGUUGUaaccGGCAccauGGCGCACc -3' miRNA: 3'- aaCGACGACAACGa---UCGU----UUGUGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 35391 | 0.66 | 0.989567 |
Target: 5'- -cGCUGCUGUccgugGCgcgcGCGAGCgACGCc -3' miRNA: 3'- aaCGACGACAa----CGau--CGUUUG-UGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 35628 | 0.67 | 0.977677 |
Target: 5'- -gGUUGCguuUGUUGC--GCAAACGCACc -3' miRNA: 3'- aaCGACG---ACAACGauCGUUUGUGUGu -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 39109 | 0.74 | 0.73077 |
Target: 5'- cUGCUGCaccgGUUaGCUGGCGGGCAgCGCGc -3' miRNA: 3'- aACGACGa---CAA-CGAUCGUUUGU-GUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 47198 | 0.67 | 0.974985 |
Target: 5'- -cGCUGCUGg----AGCAcACGCGCGg -3' miRNA: 3'- aaCGACGACaacgaUCGUuUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 47650 | 0.76 | 0.620253 |
Target: 5'- -gGCaGCUGUUGC--GCAAACGCACGg -3' miRNA: 3'- aaCGaCGACAACGauCGUUUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 49981 | 0.7 | 0.894311 |
Target: 5'- cUGCUGCUGUaGCUgacgcGGCGcuugucgcgguuggGGCGCGCGu -3' miRNA: 3'- aACGACGACAaCGA-----UCGU--------------UUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 59107 | 0.68 | 0.965502 |
Target: 5'- -gGCUGaCggcGUcGCUGGCcGACGCGCAa -3' miRNA: 3'- aaCGAC-Ga--CAaCGAUCGuUUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 63880 | 0.68 | 0.957924 |
Target: 5'- uUUGCgGUUGUUGCgaaaAGC--GCGCGCAa -3' miRNA: 3'- -AACGaCGACAACGa---UCGuuUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 75754 | 0.69 | 0.944542 |
Target: 5'- gUGCaGCUGUUGCUgcAGCugcucAAGCAaCGCAg -3' miRNA: 3'- aACGaCGACAACGA--UCG-----UUUGU-GUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 79240 | 0.68 | 0.968906 |
Target: 5'- aUGUaGCUGUUuaaGCUGGUGGugGCGCGc -3' miRNA: 3'- aACGaCGACAA---CGAUCGUUugUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 91434 | 0.66 | 0.989567 |
Target: 5'- -aGCUcGCUGUaGCUgAGCGgcggcgcgugGGCGCGCAu -3' miRNA: 3'- aaCGA-CGACAaCGA-UCGU----------UUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 92256 | 1.07 | 0.008935 |
Target: 5'- cUUGCUGCUGUUGCUAGCAAACACACAa -3' miRNA: 3'- -AACGACGACAACGAUCGUUUGUGUGU- -5' |
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6767 | 5' | -49.7 | NC_001875.2 | + | 95684 | 0.7 | 0.922775 |
Target: 5'- aUGCUuaaGCUGgcccacUUGCU-GCAAACGCGCGu -3' miRNA: 3'- aACGA---CGAC------AACGAuCGUUUGUGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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