miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6767 5' -49.7 NC_001875.2 + 47650 0.76 0.620253
Target:  5'- -gGCaGCUGUUGC--GCAAACGCACGg -3'
miRNA:   3'- aaCGaCGACAACGauCGUUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 91434 0.66 0.989567
Target:  5'- -aGCUcGCUGUaGCUgAGCGgcggcgcgugGGCGCGCAu -3'
miRNA:   3'- aaCGA-CGACAaCGA-UCGU----------UUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 35391 0.66 0.989567
Target:  5'- -cGCUGCUGUccgugGCgcgcGCGAGCgACGCc -3'
miRNA:   3'- aaCGACGACAa----CGau--CGUUUG-UGUGu -5'
6767 5' -49.7 NC_001875.2 + 19111 0.66 0.98804
Target:  5'- gUGUUGCUG-UGCgcGC-GACGCGCc -3'
miRNA:   3'- aACGACGACaACGauCGuUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 17617 0.66 0.98804
Target:  5'- -aGCUGagcaaGUUGCUGGCcGGACACGg- -3'
miRNA:   3'- aaCGACga---CAACGAUCG-UUUGUGUgu -5'
6767 5' -49.7 NC_001875.2 + 18548 0.66 0.984472
Target:  5'- gUGCUGCUGg-GCgugGGUgucuuGAGCGCGCu -3'
miRNA:   3'- aACGACGACaaCGa--UCG-----UUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 118997 0.67 0.977677
Target:  5'- -gGCUGCg--UGCUAGCcGGCGC-CGc -3'
miRNA:   3'- aaCGACGacaACGAUCGuUUGUGuGU- -5'
6767 5' -49.7 NC_001875.2 + 47198 0.67 0.974985
Target:  5'- -cGCUGCUGg----AGCAcACGCGCGg -3'
miRNA:   3'- aaCGACGACaacgaUCGUuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 13533 0.68 0.965502
Target:  5'- cUUGCaGCcGUUGUU-GCAAGCGCGCc -3'
miRNA:   3'- -AACGaCGaCAACGAuCGUUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 59107 0.68 0.965502
Target:  5'- -gGCUGaCggcGUcGCUGGCcGACGCGCAa -3'
miRNA:   3'- aaCGAC-Ga--CAaCGAUCGuUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 63880 0.68 0.957924
Target:  5'- uUUGCgGUUGUUGCgaaaAGC--GCGCGCAa -3'
miRNA:   3'- -AACGaCGACAACGa---UCGuuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 120938 0.69 0.934228
Target:  5'- --uCUGCUGUUGCU-GCugauaguuGAGCACGCGu -3'
miRNA:   3'- aacGACGACAACGAuCG--------UUUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 49981 0.7 0.894311
Target:  5'- cUGCUGCUGUaGCUgacgcGGCGcuugucgcgguuggGGCGCGCGu -3'
miRNA:   3'- aACGACGACAaCGA-----UCGU--------------UUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 118466 0.71 0.88919
Target:  5'- cUGCgucgcGCUGUggaaaacgGCUAGCAcGCACGCc -3'
miRNA:   3'- aACGa----CGACAa-------CGAUCGUuUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 127281 0.7 0.909524
Target:  5'- -gGCUGCUcgcGUUGCUGGCGgcccccaAAC-CGCAg -3'
miRNA:   3'- aaCGACGA---CAACGAUCGU-------UUGuGUGU- -5'
6767 5' -49.7 NC_001875.2 + 125051 0.7 0.896464
Target:  5'- aUGUUGCUGUUgGCgaAGCu-GCGCACAc -3'
miRNA:   3'- aACGACGACAA-CGa-UCGuuUGUGUGU- -5'
6767 5' -49.7 NC_001875.2 + 123998 0.72 0.812394
Target:  5'- -gGCUGCaUGUUGCgcGCGAcCACGCu -3'
miRNA:   3'- aaCGACG-ACAACGauCGUUuGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 39109 0.74 0.73077
Target:  5'- cUGCUGCaccgGUUaGCUGGCGGGCAgCGCGc -3'
miRNA:   3'- aACGACGa---CAA-CGAUCGUUUGU-GUGU- -5'
6767 5' -49.7 NC_001875.2 + 120556 0.75 0.69815
Target:  5'- -gGCaGCUGUUGUUuugAGCGAGCGCGCc -3'
miRNA:   3'- aaCGaCGACAACGA---UCGUUUGUGUGu -5'
6767 5' -49.7 NC_001875.2 + 113128 0.66 0.989567
Target:  5'- -cGCUGUUGUUGUgcGGCAcguuaauguGCACGCc -3'
miRNA:   3'- aaCGACGACAACGa-UCGUu--------UGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.