miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 61895 0.68 0.720436
Target:  5'- gCCGUgGCCCGacacgCGCCGUGUcacgGCGGAAAc -3'
miRNA:   3'- -GGCAaCGGGCg----GCGGUGCA----UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 62558 0.67 0.748682
Target:  5'- aCGUUGUgcggguggacuugCCGCCGCCACGgcucgagccGCGGc-- -3'
miRNA:   3'- gGCAACG-------------GGCGGCGGUGCa--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 62715 0.67 0.749642
Target:  5'- aCGUUGCaaaCGCUGCUGCGUgugcaACGGcAAGa -3'
miRNA:   3'- gGCAACGg--GCGGCGGUGCA-----UGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 63281 0.66 0.821527
Target:  5'- gCGgUGCgcgaccgCCGCCGCCGCG-GCGGcAAAc -3'
miRNA:   3'- gGCaACG-------GGCGGCGGUGCaUGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 66077 0.7 0.619541
Target:  5'- gCCGccGCCCGCCGCgCACGaaUACGccGAGg -3'
miRNA:   3'- -GGCaaCGGGCGGCG-GUGC--AUGC--CUUu -5'
6768 3' -57.7 NC_001875.2 + 68953 0.67 0.750602
Target:  5'- gUCGUUGUcuuCCGgCGCCACGcauuugcacagcaagGCGGAAAc -3'
miRNA:   3'- -GGCAACG---GGCgGCGGUGCa--------------UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 73024 0.67 0.784372
Target:  5'- gCCGUUGCCCGCCugguaguuguugucGaCUACGUucGCGucGAAAa -3'
miRNA:   3'- -GGCAACGGGCGG--------------C-GGUGCA--UGC--CUUU- -5'
6768 3' -57.7 NC_001875.2 + 74156 0.72 0.490514
Target:  5'- gCGgcGCCCGCCGCCGCcagcuUGGAc- -3'
miRNA:   3'- gGCaaCGGGCGGCGGUGcau--GCCUuu -5'
6768 3' -57.7 NC_001875.2 + 77126 0.66 0.828282
Target:  5'- cCUGUccacGCCCGUCGCCAgGcaguacaaaugcuuUGCGGAc- -3'
miRNA:   3'- -GGCAa---CGGGCGGCGGUgC--------------AUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 78417 0.66 0.839016
Target:  5'- aCGgaGCCCGaaaaCCG-CACGUGCGGcAAAa -3'
miRNA:   3'- gGCaaCGGGC----GGCgGUGCAUGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 82496 0.72 0.481048
Target:  5'- aCCacgGCCCGCCGCCcACGcUGCaGGAAc -3'
miRNA:   3'- -GGcaaCGGGCGGCGG-UGC-AUG-CCUUu -5'
6768 3' -57.7 NC_001875.2 + 83456 0.7 0.578991
Target:  5'- gCCGgcaCCUGUCGCCGCGU-CGGAc- -3'
miRNA:   3'- -GGCaacGGGCGGCGGUGCAuGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 89706 0.66 0.796157
Target:  5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3'
miRNA:   3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 89988 0.69 0.639902
Target:  5'- uUGUUGCagcuCGCCGCCGCGgcGCGGc-- -3'
miRNA:   3'- gGCAACGg---GCGGCGGUGCa-UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 91558 1.07 0.002314
Target:  5'- cCCGUUGCCCGCCGCCACGUACGGAAAc -3'
miRNA:   3'- -GGCAACGGGCGGCGGUGCAUGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 92023 0.67 0.759186
Target:  5'- aCCGUgccaaaGUCgGCCGCCgACGUccACGGGc- -3'
miRNA:   3'- -GGCAa-----CGGgCGGCGG-UGCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 92228 0.68 0.720436
Target:  5'- gCCGggGCCgGCCGCUAcuuuagccCGUgcacGCGGAc- -3'
miRNA:   3'- -GGCaaCGGgCGGCGGU--------GCA----UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 92717 0.67 0.77793
Target:  5'- gCCGgucaggGUcgUCGCCGCCAUGgagcGCGGAAc -3'
miRNA:   3'- -GGCaa----CG--GGCGGCGGUGCa---UGCCUUu -5'
6768 3' -57.7 NC_001875.2 + 95738 0.69 0.670377
Target:  5'- -aGcgGCgCCGCCGCCGCGUGCu---- -3'
miRNA:   3'- ggCaaCG-GGCGGCGGUGCAUGccuuu -5'
6768 3' -57.7 NC_001875.2 + 97977 0.71 0.519407
Target:  5'- gCCGUucUGCCgGCCGCgCACgGUGCGcGAc- -3'
miRNA:   3'- -GGCA--ACGGgCGGCG-GUG-CAUGC-CUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.