miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 1733 0.68 0.720436
Target:  5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3'
miRNA:   3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 1787 0.67 0.77793
Target:  5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3'
miRNA:   3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 2296 0.66 0.822378
Target:  5'- aCGccgGCCCGCCGUggaGCaUACGGAc- -3'
miRNA:   3'- gGCaa-CGGGCGGCGg--UGcAUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 12289 0.66 0.822378
Target:  5'- aCCGUgugcaGCCggcaCGCCGCCGUGUGCGuGGu- -3'
miRNA:   3'- -GGCAa----CGG----GCGGCGGUGCAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 12434 0.7 0.599218
Target:  5'- gCCGUUGCgUGCgCGCCGCGgu-GGAc- -3'
miRNA:   3'- -GGCAACGgGCG-GCGGUGCaugCCUuu -5'
6768 3' -57.7 NC_001875.2 + 18237 0.71 0.539037
Target:  5'- gCCGcgGCCCGCCGCCGacucgaacgcCGUGCuGGc-- -3'
miRNA:   3'- -GGCaaCGGGCGGCGGU----------GCAUG-CCuuu -5'
6768 3' -57.7 NC_001875.2 + 19969 0.66 0.830786
Target:  5'- gCCGgcGCCuCGCCGUUgcugACGUGCGuGGc- -3'
miRNA:   3'- -GGCaaCGG-GCGGCGG----UGCAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 23755 0.72 0.471672
Target:  5'- aCGcUUGUCCGCCGCCuCGUACGc--- -3'
miRNA:   3'- gGC-AACGGGCGGCGGuGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 23786 0.67 0.77793
Target:  5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3'
miRNA:   3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 26873 0.7 0.599218
Target:  5'- gCCGUgcaccaGCCCGCCGCCGCacACGa--- -3'
miRNA:   3'- -GGCAa-----CGGGCGGCGGUGcaUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 28939 0.69 0.660239
Target:  5'- uCCGUUcaacgGCCgGCCGCUcaAUGUGCGGu-- -3'
miRNA:   3'- -GGCAA-----CGGgCGGCGG--UGCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 29770 0.66 0.813798
Target:  5'- aCUG-UGCUCGCC-CCAaaugauCGUGCGGGAc -3'
miRNA:   3'- -GGCaACGGGCGGcGGU------GCAUGCCUUu -5'
6768 3' -57.7 NC_001875.2 + 31250 0.67 0.787112
Target:  5'- gCCGgcGCCCGgC-CCGCGUACGc--- -3'
miRNA:   3'- -GGCaaCGGGCgGcGGUGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 33801 0.66 0.839016
Target:  5'- gCGcacUUGCCCGUCgGCgCACGgcgcGCGGggGa -3'
miRNA:   3'- gGC---AACGGGCGG-CG-GUGCa---UGCCuuU- -5'
6768 3' -57.7 NC_001875.2 + 33950 0.67 0.768618
Target:  5'- gCCGacGCCCGCaacguGCC-CGUGCGGc-- -3'
miRNA:   3'- -GGCaaCGGGCGg----CGGuGCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 40578 0.7 0.619541
Target:  5'- -aGUUGCCCGCgCGCUACGUAa----- -3'
miRNA:   3'- ggCAACGGGCG-GCGGUGCAUgccuuu -5'
6768 3' -57.7 NC_001875.2 + 41843 0.66 0.830786
Target:  5'- uCCaGUUGCCgCGCCGCgGCG-GCGa--- -3'
miRNA:   3'- -GG-CAACGG-GCGGCGgUGCaUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 46476 0.66 0.839829
Target:  5'- gCGuUUGCCaacgcgaaCGCCGCCACGgcgucggcguucgcgGCGGGc- -3'
miRNA:   3'- gGC-AACGG--------GCGGCGGUGCa--------------UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 49388 0.68 0.720436
Target:  5'- aCCGUU-CCUGCCGCCGCGaACu---- -3'
miRNA:   3'- -GGCAAcGGGCGGCGGUGCaUGccuuu -5'
6768 3' -57.7 NC_001875.2 + 59306 0.66 0.839016
Target:  5'- cCCGUUGUuuaauuCCGuuGCCAUGgacACGGuGAg -3'
miRNA:   3'- -GGCAACG------GGCggCGGUGCa--UGCCuUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.