Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6768 | 3' | -57.7 | NC_001875.2 | + | 103458 | 0.66 | 0.813798 |
Target: 5'- gCGUcgUGCaCGCCGCgACGUACGa--- -3' miRNA: 3'- gGCA--ACGgGCGGCGgUGCAUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 89706 | 0.66 | 0.796157 |
Target: 5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3' miRNA: 3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 46476 | 0.66 | 0.839829 |
Target: 5'- gCGuUUGCCaacgcgaaCGCCGCCACGgcgucggcguucgcgGCGGGc- -3' miRNA: 3'- gGC-AACGG--------GCGGCGGUGCa--------------UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 59306 | 0.66 | 0.839016 |
Target: 5'- cCCGUUGUuuaauuCCGuuGCCAUGgacACGGuGAg -3' miRNA: 3'- -GGCAACG------GGCggCGGUGCa--UGCCuUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 19969 | 0.66 | 0.830786 |
Target: 5'- gCCGgcGCCuCGCCGUUgcugACGUGCGuGGc- -3' miRNA: 3'- -GGCaaCGG-GCGGCGG----UGCAUGC-CUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 77126 | 0.66 | 0.828282 |
Target: 5'- cCUGUccacGCCCGUCGCCAgGcaguacaaaugcuuUGCGGAc- -3' miRNA: 3'- -GGCAa---CGGGCGGCGGUgC--------------AUGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 33801 | 0.66 | 0.839016 |
Target: 5'- gCGcacUUGCCCGUCgGCgCACGgcgcGCGGggGa -3' miRNA: 3'- gGC---AACGGGCGG-CG-GUGCa---UGCCuuU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 63281 | 0.66 | 0.821527 |
Target: 5'- gCGgUGCgcgaccgCCGCCGCCGCG-GCGGcAAAc -3' miRNA: 3'- gGCaACG-------GGCGGCGGUGCaUGCC-UUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 29770 | 0.66 | 0.813798 |
Target: 5'- aCUG-UGCUCGCC-CCAaaugauCGUGCGGGAc -3' miRNA: 3'- -GGCaACGGGCGGcGGU------GCAUGCCUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 2296 | 0.66 | 0.822378 |
Target: 5'- aCGccgGCCCGCCGUggaGCaUACGGAc- -3' miRNA: 3'- gGCaa-CGGGCGGCGg--UGcAUGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 12289 | 0.66 | 0.822378 |
Target: 5'- aCCGUgugcaGCCggcaCGCCGCCGUGUGCGuGGu- -3' miRNA: 3'- -GGCAa----CGG----GCGGCGGUGCAUGC-CUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 41843 | 0.66 | 0.830786 |
Target: 5'- uCCaGUUGCCgCGCCGCgGCG-GCGa--- -3' miRNA: 3'- -GG-CAACGG-GCGGCGgUGCaUGCcuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 111976 | 0.66 | 0.830786 |
Target: 5'- aCGgcGCCCG-CGCCGCGacGCGGc-- -3' miRNA: 3'- gGCaaCGGGCgGCGGUGCa-UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 78417 | 0.66 | 0.839016 |
Target: 5'- aCGgaGCCCGaaaaCCG-CACGUGCGGcAAAa -3' miRNA: 3'- gGCaaCGGGC----GGCgGUGCAUGCC-UUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 128691 | 0.67 | 0.758236 |
Target: 5'- cUCGccGCCCGaCGCCGCGUccgcgcaGCGGGc- -3' miRNA: 3'- -GGCaaCGGGCgGCGGUGCA-------UGCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 62715 | 0.67 | 0.749642 |
Target: 5'- aCGUUGCaaaCGCUGCUGCGUgugcaACGGcAAGa -3' miRNA: 3'- gGCAACGg--GCGGCGGUGCA-----UGCC-UUU- -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 62558 | 0.67 | 0.748682 |
Target: 5'- aCGUUGUgcggguggacuugCCGCCGCCACGgcucgagccGCGGc-- -3' miRNA: 3'- gGCAACG-------------GGCGGCGGUGCa--------UGCCuuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 92717 | 0.67 | 0.77793 |
Target: 5'- gCCGgucaggGUcgUCGCCGCCAUGgagcGCGGAAc -3' miRNA: 3'- -GGCaa----CG--GGCGGCGGUGCa---UGCCUUu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 99059 | 0.67 | 0.749642 |
Target: 5'- gCGgcGCCCGCCcacGCCGCGcgaGGAc- -3' miRNA: 3'- gGCaaCGGGCGG---CGGUGCaugCCUuu -5' |
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6768 | 3' | -57.7 | NC_001875.2 | + | 68953 | 0.67 | 0.750602 |
Target: 5'- gUCGUUGUcuuCCGgCGCCACGcauuugcacagcaagGCGGAAAc -3' miRNA: 3'- -GGCAACG---GGCgGCGGUGCa--------------UGCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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