miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 91558 1.07 0.002314
Target:  5'- cCCGUUGCCCGCCGCCACGUACGGAAAc -3'
miRNA:   3'- -GGCAACGGGCGGCGGUGCAUGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 104128 0.79 0.190133
Target:  5'- gCGUUGCCCGUCGCCucguUGUGCGGc-- -3'
miRNA:   3'- gGCAACGGGCGGCGGu---GCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 117939 0.73 0.408836
Target:  5'- gCCGgcgUGCgCGCCGCCGCGUuuGGu-- -3'
miRNA:   3'- -GGCa--ACGgGCGGCGGUGCAugCCuuu -5'
6768 3' -57.7 NC_001875.2 + 23755 0.72 0.471672
Target:  5'- aCGcUUGUCCGCCGCCuCGUACGc--- -3'
miRNA:   3'- gGC-AACGGGCGGCGGuGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 82496 0.72 0.481048
Target:  5'- aCCacgGCCCGCCGCCcACGcUGCaGGAAc -3'
miRNA:   3'- -GGcaaCGGGCGGCGG-UGC-AUG-CCUUu -5'
6768 3' -57.7 NC_001875.2 + 74156 0.72 0.490514
Target:  5'- gCGgcGCCCGCCGCCGCcagcuUGGAc- -3'
miRNA:   3'- gGCaaCGGGCGGCGGUGcau--GCCUuu -5'
6768 3' -57.7 NC_001875.2 + 97977 0.71 0.519407
Target:  5'- gCCGUucUGCCgGCCGCgCACgGUGCGcGAc- -3'
miRNA:   3'- -GGCA--ACGGgCGGCG-GUG-CAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 18237 0.71 0.539037
Target:  5'- gCCGcgGCCCGCCGCCGacucgaacgcCGUGCuGGc-- -3'
miRNA:   3'- -GGCaaCGGGCGGCGGU----------GCAUG-CCuuu -5'
6768 3' -57.7 NC_001875.2 + 83456 0.7 0.578991
Target:  5'- gCCGgcaCCUGUCGCCGCGU-CGGAc- -3'
miRNA:   3'- -GGCaacGGGCGGCGGUGCAuGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 26873 0.7 0.599218
Target:  5'- gCCGUgcaccaGCCCGCCGCCGCacACGa--- -3'
miRNA:   3'- -GGCAa-----CGGGCGGCGGUGcaUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 12434 0.7 0.599218
Target:  5'- gCCGUUGCgUGCgCGCCGCGgu-GGAc- -3'
miRNA:   3'- -GGCAACGgGCG-GCGGUGCaugCCUuu -5'
6768 3' -57.7 NC_001875.2 + 111899 0.7 0.619541
Target:  5'- aCCGUgcgcGCCgGCCGCUccgUGUACGGGc- -3'
miRNA:   3'- -GGCAa---CGGgCGGCGGu--GCAUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 40578 0.7 0.619541
Target:  5'- -aGUUGCCCGCgCGCUACGUAa----- -3'
miRNA:   3'- ggCAACGGGCG-GCGGUGCAUgccuuu -5'
6768 3' -57.7 NC_001875.2 + 66077 0.7 0.619541
Target:  5'- gCCGccGCCCGCCGCgCACGaaUACGccGAGg -3'
miRNA:   3'- -GGCaaCGGGCGGCG-GUGC--AUGC--CUUu -5'
6768 3' -57.7 NC_001875.2 + 89988 0.69 0.639902
Target:  5'- uUGUUGCagcuCGCCGCCGCGgcGCGGc-- -3'
miRNA:   3'- gGCAACGg---GCGGCGGUGCa-UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 102810 0.69 0.650077
Target:  5'- gUCGUUuaGCCCGUCGCCGCcgcaaauCGGGAu -3'
miRNA:   3'- -GGCAA--CGGGCGGCGGUGcau----GCCUUu -5'
6768 3' -57.7 NC_001875.2 + 28939 0.69 0.660239
Target:  5'- uCCGUUcaacgGCCgGCCGCUcaAUGUGCGGu-- -3'
miRNA:   3'- -GGCAA-----CGGgCGGCGG--UGCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 95738 0.69 0.670377
Target:  5'- -aGcgGCgCCGCCGCCGCGUGCu---- -3'
miRNA:   3'- ggCaaCG-GGCGGCGGUGCAUGccuuu -5'
6768 3' -57.7 NC_001875.2 + 98704 0.68 0.680485
Target:  5'- gCUGUUGCCCuGCCGCCAUuuuuguguGUGCa---- -3'
miRNA:   3'- -GGCAACGGG-CGGCGGUG--------CAUGccuuu -5'
6768 3' -57.7 NC_001875.2 + 1733 0.68 0.720436
Target:  5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3'
miRNA:   3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.