miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 29770 0.66 0.813798
Target:  5'- aCUG-UGCUCGCC-CCAaaugauCGUGCGGGAc -3'
miRNA:   3'- -GGCaACGGGCGGcGGU------GCAUGCCUUu -5'
6768 3' -57.7 NC_001875.2 + 62558 0.67 0.748682
Target:  5'- aCGUUGUgcggguggacuugCCGCCGCCACGgcucgagccGCGGc-- -3'
miRNA:   3'- gGCAACG-------------GGCGGCGGUGCa--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 62715 0.67 0.749642
Target:  5'- aCGUUGCaaaCGCUGCUGCGUgugcaACGGcAAGa -3'
miRNA:   3'- gGCAACGg--GCGGCGGUGCA-----UGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 128691 0.67 0.758236
Target:  5'- cUCGccGCCCGaCGCCGCGUccgcgcaGCGGGc- -3'
miRNA:   3'- -GGCaaCGGGCgGCGGUGCA-------UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 23786 0.67 0.77793
Target:  5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3'
miRNA:   3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 1787 0.67 0.77793
Target:  5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3'
miRNA:   3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 73024 0.67 0.784372
Target:  5'- gCCGUUGCCCGCCugguaguuguugucGaCUACGUucGCGucGAAAa -3'
miRNA:   3'- -GGCAACGGGCGG--------------C-GGUGCA--UGC--CUUU- -5'
6768 3' -57.7 NC_001875.2 + 102995 0.67 0.787112
Target:  5'- gCGacaagUGCCCGCCGUC-CGUGuCGGc-- -3'
miRNA:   3'- gGCa----ACGGGCGGCGGuGCAU-GCCuuu -5'
6768 3' -57.7 NC_001875.2 + 89706 0.66 0.796157
Target:  5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3'
miRNA:   3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 92228 0.68 0.720436
Target:  5'- gCCGggGCCgGCCGCUAcuuuagccCGUgcacGCGGAc- -3'
miRNA:   3'- -GGCaaCGGgCGGCGGU--------GCA----UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 61895 0.68 0.720436
Target:  5'- gCCGUgGCCCGacacgCGCCGUGUcacgGCGGAAAc -3'
miRNA:   3'- -GGCAaCGGGCg----GCGGUGCA----UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 1733 0.68 0.720436
Target:  5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3'
miRNA:   3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 82496 0.72 0.481048
Target:  5'- aCCacgGCCCGCCGCCcACGcUGCaGGAAc -3'
miRNA:   3'- -GGcaaCGGGCGGCGG-UGC-AUG-CCUUu -5'
6768 3' -57.7 NC_001875.2 + 74156 0.72 0.490514
Target:  5'- gCGgcGCCCGCCGCCGCcagcuUGGAc- -3'
miRNA:   3'- gGCaaCGGGCGGCGGUGcau--GCCUuu -5'
6768 3' -57.7 NC_001875.2 + 97977 0.71 0.519407
Target:  5'- gCCGUucUGCCgGCCGCgCACgGUGCGcGAc- -3'
miRNA:   3'- -GGCA--ACGGgCGGCG-GUG-CAUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 12434 0.7 0.599218
Target:  5'- gCCGUUGCgUGCgCGCCGCGgu-GGAc- -3'
miRNA:   3'- -GGCAACGgGCG-GCGGUGCaugCCUuu -5'
6768 3' -57.7 NC_001875.2 + 111899 0.7 0.619541
Target:  5'- aCCGUgcgcGCCgGCCGCUccgUGUACGGGc- -3'
miRNA:   3'- -GGCAa---CGGgCGGCGGu--GCAUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 102810 0.69 0.650077
Target:  5'- gUCGUUuaGCCCGUCGCCGCcgcaaauCGGGAu -3'
miRNA:   3'- -GGCAA--CGGGCGGCGGUGcau----GCCUUu -5'
6768 3' -57.7 NC_001875.2 + 28939 0.69 0.660239
Target:  5'- uCCGUUcaacgGCCgGCCGCUcaAUGUGCGGu-- -3'
miRNA:   3'- -GGCAA-----CGGgCGGCGG--UGCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 95738 0.69 0.670377
Target:  5'- -aGcgGCgCCGCCGCCGCGUGCu---- -3'
miRNA:   3'- ggCaaCG-GGCGGCGGUGCAUGccuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.