miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6772 3' -50.1 NC_001875.2 + 89971 1.15 0.003678
Target:  5'- aGGUGUUGGACGAGCAGUUGUUGCAGCu -3'
miRNA:   3'- -CCACAACCUGCUCGUCAACAACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 11774 0.81 0.450178
Target:  5'- cGUGUUGGGCGuuagccuguucaGGUAGUUGUUGcCGGCc -3'
miRNA:   3'- cCACAACCUGC------------UCGUCAACAAC-GUCG- -5'
6772 3' -50.1 NC_001875.2 + 829 0.76 0.711431
Target:  5'- -cUGgUGGugGGGCGGUgg-UGCAGCa -3'
miRNA:   3'- ccACaACCugCUCGUCAacaACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 67811 0.75 0.732249
Target:  5'- aGUGUacccGGACGAGCGGUuuucggccaagUGgcGCGGCg -3'
miRNA:   3'- cCACAa---CCUGCUCGUCA-----------ACaaCGUCG- -5'
6772 3' -50.1 NC_001875.2 + 57530 0.75 0.742519
Target:  5'- cGUGUUGuagcuaGAGCAGcgGUUGCGGCa -3'
miRNA:   3'- cCACAACcug---CUCGUCaaCAACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 64481 0.73 0.819954
Target:  5'- ----gUGGACGAgucGCGGUUGUUGCcGCc -3'
miRNA:   3'- ccacaACCUGCU---CGUCAACAACGuCG- -5'
6772 3' -50.1 NC_001875.2 + 44422 0.73 0.846153
Target:  5'- --aGUUGGugGGGCGGUcGUUGaacgcgauCAGCa -3'
miRNA:   3'- ccaCAACCugCUCGUCAaCAAC--------GUCG- -5'
6772 3' -50.1 NC_001875.2 + 122895 0.72 0.885432
Target:  5'- cGUGUUGGACGAaacggccgGCcGcUGcUGCAGCg -3'
miRNA:   3'- cCACAACCUGCU--------CGuCaACaACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 35348 0.71 0.912448
Target:  5'- -aUGUUGGcggccgagauacACGGGCAGgUGgaGCAGCu -3'
miRNA:   3'- ccACAACC------------UGCUCGUCaACaaCGUCG- -5'
6772 3' -50.1 NC_001875.2 + 73723 0.71 0.918554
Target:  5'- uGGgGUUGGuCGggagguggcugcGGCGGUUGUUGgGGCc -3'
miRNA:   3'- -CCaCAACCuGC------------UCGUCAACAACgUCG- -5'
6772 3' -50.1 NC_001875.2 + 113120 0.7 0.935289
Target:  5'- ---uUUGGGCGcGCuGUUGUugUGCGGCa -3'
miRNA:   3'- ccacAACCUGCuCGuCAACA--ACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 68741 0.7 0.935289
Target:  5'- ----aUGGACGAGCGGUUGcucgacacgcUGguGCa -3'
miRNA:   3'- ccacaACCUGCUCGUCAACa---------ACguCG- -5'
6772 3' -50.1 NC_001875.2 + 104911 0.7 0.943245
Target:  5'- cGUGUUGGcaacccaGCGGcccuccuuguaaauGCuGUUGUUGUAGCa -3'
miRNA:   3'- cCACAACC-------UGCU--------------CGuCAACAACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 123081 0.7 0.945129
Target:  5'- -----cGGGCuGGUccAGUUGUUGCAGCa -3'
miRNA:   3'- ccacaaCCUGcUCG--UCAACAACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 65143 0.69 0.96173
Target:  5'- uGGUGUcGGA--GGCGGUcacgUGCAGCa -3'
miRNA:   3'- -CCACAaCCUgcUCGUCAaca-ACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 26092 0.69 0.967919
Target:  5'- aGUGUgaagUGGGCGAGgAGcucaucgaccagUGggGCAGCg -3'
miRNA:   3'- cCACA----ACCUGCUCgUCa-----------ACaaCGUCG- -5'
6772 3' -50.1 NC_001875.2 + 123821 0.69 0.96856
Target:  5'- -uUGUUGGugGAGCAGUacaUGUcGUAc- -3'
miRNA:   3'- ccACAACCugCUCGUCA---ACAaCGUcg -5'
6772 3' -50.1 NC_001875.2 + 125005 0.69 0.96856
Target:  5'- --aGUUGGcguCGGGCAcGUUGUcgacGCGGCg -3'
miRNA:   3'- ccaCAACCu--GCUCGU-CAACAa---CGUCG- -5'
6772 3' -50.1 NC_001875.2 + 70772 0.68 0.981767
Target:  5'- -----cGGGCGGcGCAGUUuuugUGCAGCa -3'
miRNA:   3'- ccacaaCCUGCU-CGUCAAca--ACGUCG- -5'
6772 3' -50.1 NC_001875.2 + 124892 0.67 0.983811
Target:  5'- cGUGUUGaGgcGCGGGUu-UUGUUGUAGCg -3'
miRNA:   3'- cCACAAC-C--UGCUCGucAACAACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.