Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6772 | 3' | -50.1 | NC_001875.2 | + | 829 | 0.76 | 0.711431 |
Target: 5'- -cUGgUGGugGGGCGGUgg-UGCAGCa -3' miRNA: 3'- ccACaACCugCUCGUCAacaACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 57319 | 0.66 | 0.995324 |
Target: 5'- --cGUcGG-CGAcGCAaUUGUUGCGGCa -3' miRNA: 3'- ccaCAaCCuGCU-CGUcAACAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 11989 | 0.66 | 0.995324 |
Target: 5'- cGGcGUUGGGCGcGGguGUgGUgGCgAGCg -3' miRNA: 3'- -CCaCAACCUGC-UCguCAaCAaCG-UCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 24075 | 0.66 | 0.991543 |
Target: 5'- cGUuUUGGGCG-GCGGcguugaGUUGCGGCc -3' miRNA: 3'- cCAcAACCUGCuCGUCaa----CAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 124635 | 0.67 | 0.987372 |
Target: 5'- cGUGUUGGAcaCGAGCGGgucGUUG--GCa -3' miRNA: 3'- cCACAACCU--GCUCGUCaa-CAACguCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 124892 | 0.67 | 0.983811 |
Target: 5'- cGUGUUGaGgcGCGGGUu-UUGUUGUAGCg -3' miRNA: 3'- cCACAAC-C--UGCUCGucAACAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 123821 | 0.69 | 0.96856 |
Target: 5'- -uUGUUGGugGAGCAGUacaUGUcGUAc- -3' miRNA: 3'- ccACAACCugCUCGUCA---ACAaCGUcg -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 125005 | 0.69 | 0.96856 |
Target: 5'- --aGUUGGcguCGGGCAcGUUGUcgacGCGGCg -3' miRNA: 3'- ccaCAACCu--GCUCGU-CAACAa---CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 104911 | 0.7 | 0.943245 |
Target: 5'- cGUGUUGGcaacccaGCGGcccuccuuguaaauGCuGUUGUUGUAGCa -3' miRNA: 3'- cCACAACC-------UGCU--------------CGuCAACAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 68741 | 0.7 | 0.935289 |
Target: 5'- ----aUGGACGAGCGGUUGcucgacacgcUGguGCa -3' miRNA: 3'- ccacaACCUGCUCGUCAACa---------ACguCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 35348 | 0.71 | 0.912448 |
Target: 5'- -aUGUUGGcggccgagauacACGGGCAGgUGgaGCAGCu -3' miRNA: 3'- ccACAACC------------UGCUCGUCaACaaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 44422 | 0.73 | 0.846153 |
Target: 5'- --aGUUGGugGGGCGGUcGUUGaacgcgauCAGCa -3' miRNA: 3'- ccaCAACCugCUCGUCAaCAAC--------GUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 64481 | 0.73 | 0.819954 |
Target: 5'- ----gUGGACGAgucGCGGUUGUUGCcGCc -3' miRNA: 3'- ccacaACCUGCU---CGUCAACAACGuCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 57530 | 0.75 | 0.742519 |
Target: 5'- cGUGUUGuagcuaGAGCAGcgGUUGCGGCa -3' miRNA: 3'- cCACAACcug---CUCGUCaaCAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 113120 | 0.7 | 0.935289 |
Target: 5'- ---uUUGGGCGcGCuGUUGUugUGCGGCa -3' miRNA: 3'- ccacAACCUGCuCGuCAACA--ACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 73723 | 0.71 | 0.918554 |
Target: 5'- uGGgGUUGGuCGggagguggcugcGGCGGUUGUUGgGGCc -3' miRNA: 3'- -CCaCAACCuGC------------UCGUCAACAACgUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 122895 | 0.72 | 0.885432 |
Target: 5'- cGUGUUGGACGAaacggccgGCcGcUGcUGCAGCg -3' miRNA: 3'- cCACAACCUGCU--------CGuCaACaACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 67811 | 0.75 | 0.732249 |
Target: 5'- aGUGUacccGGACGAGCGGUuuucggccaagUGgcGCGGCg -3' miRNA: 3'- cCACAa---CCUGCUCGUCA-----------ACaaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 11774 | 0.81 | 0.450178 |
Target: 5'- cGUGUUGGGCGuuagccuguucaGGUAGUUGUUGcCGGCc -3' miRNA: 3'- cCACAACCUGC------------UCGUCAACAAC-GUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 131743 | 0.66 | 0.995324 |
Target: 5'- uGGUGcaUUGGGCcGGCGGcgGaucggGCGGCg -3' miRNA: 3'- -CCAC--AACCUGcUCGUCaaCaa---CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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