miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6774 3' -55 NC_001875.2 + 103325 0.65 0.934484
Target:  5'- uGCCGGGcGaCGCg-UGCGcgACGGcuAGCCa -3'
miRNA:   3'- -UGGCCCaC-GCGgaACGCa-UGCU--UUGG- -5'
6774 3' -55 NC_001875.2 + 40179 0.66 0.929343
Target:  5'- cGCaUGGGcGUGCCguacGCGUACG--GCCa -3'
miRNA:   3'- -UG-GCCCaCGCGGaa--CGCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 118874 0.66 0.929343
Target:  5'- gGCgCGGaGcccacGCGCCgccGCG-ACGAGACCg -3'
miRNA:   3'- -UG-GCC-Ca----CGCGGaa-CGCaUGCUUUGG- -5'
6774 3' -55 NC_001875.2 + 21328 0.66 0.929343
Target:  5'- uGCgCGGGgccCGCCUUGUugACGAGcagcGCCg -3'
miRNA:   3'- -UG-GCCCac-GCGGAACGcaUGCUU----UGG- -5'
6774 3' -55 NC_001875.2 + 36981 0.66 0.929343
Target:  5'- ------cGCGCCUgGCGUACGugGCCg -3'
miRNA:   3'- uggcccaCGCGGAaCGCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 83003 0.66 0.923958
Target:  5'- cGCCGGcGggcuugaagcgGCGCCguaGCGcGCGGAGCa -3'
miRNA:   3'- -UGGCC-Ca----------CGCGGaa-CGCaUGCUUUGg -5'
6774 3' -55 NC_001875.2 + 109090 0.66 0.923958
Target:  5'- uGCCGGuGaUGUGCUggaGCGgUGCGugGCCg -3'
miRNA:   3'- -UGGCC-C-ACGCGGaa-CGC-AUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 116587 0.66 0.923958
Target:  5'- cGCCGguGGUGCGCa--GCGUGaugGAAACa -3'
miRNA:   3'- -UGGC--CCACGCGgaaCGCAUg--CUUUGg -5'
6774 3' -55 NC_001875.2 + 100893 0.66 0.923958
Target:  5'- aGCCGGuccggGCGCCgcaGCGcGCGGAgacgcgucGCCg -3'
miRNA:   3'- -UGGCCca---CGCGGaa-CGCaUGCUU--------UGG- -5'
6774 3' -55 NC_001875.2 + 95428 0.66 0.923958
Target:  5'- cACCGcG-GCGCCggccaGCGUGCGcgGCUg -3'
miRNA:   3'- -UGGCcCaCGCGGaa---CGCAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 89002 0.66 0.918329
Target:  5'- cGCCGGauuUGCGCgCUacGCGUGCGAGcGCa -3'
miRNA:   3'- -UGGCCc--ACGCG-GAa-CGCAUGCUU-UGg -5'
6774 3' -55 NC_001875.2 + 66367 0.66 0.918329
Target:  5'- gUCGGGccGCuuGCCUUGC-UGCGugGCCa -3'
miRNA:   3'- uGGCCCa-CG--CGGAACGcAUGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 89208 0.66 0.914834
Target:  5'- gGCUGGGcGUGCCagacaaggaguacacUUGCGUguugGCGguGCCc -3'
miRNA:   3'- -UGGCCCaCGCGG---------------AACGCA----UGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 38552 0.66 0.912456
Target:  5'- gGCCGGGUugcuGCGUCggcgcgGCGUGCccauCCu -3'
miRNA:   3'- -UGGCCCA----CGCGGaa----CGCAUGcuuuGG- -5'
6774 3' -55 NC_001875.2 + 94959 0.66 0.906342
Target:  5'- uGCCGgcGGUGUGCCgcGCGcACGAcGACg -3'
miRNA:   3'- -UGGC--CCACGCGGaaCGCaUGCU-UUGg -5'
6774 3' -55 NC_001875.2 + 49361 0.67 0.899988
Target:  5'- gGCCGuGGUGCaaCaUGCGgcgGCGguACCg -3'
miRNA:   3'- -UGGC-CCACGcgGaACGCa--UGCuuUGG- -5'
6774 3' -55 NC_001875.2 + 77826 0.67 0.899988
Target:  5'- uGCCGGuacgcgcGCGCCgcaagGcCGUGCGcGACCa -3'
miRNA:   3'- -UGGCCca-----CGCGGaa---C-GCAUGCuUUGG- -5'
6774 3' -55 NC_001875.2 + 59442 0.67 0.898036
Target:  5'- uGCCGGcaccaauuGUGCGUCaugUGCGUGCGcAAaauugcgcagcgcgGCCg -3'
miRNA:   3'- -UGGCC--------CACGCGGa--ACGCAUGC-UU--------------UGG- -5'
6774 3' -55 NC_001875.2 + 22949 0.67 0.893398
Target:  5'- gACCGGGcgGCGCCa--UGUACGccuCCg -3'
miRNA:   3'- -UGGCCCa-CGCGGaacGCAUGCuuuGG- -5'
6774 3' -55 NC_001875.2 + 4535 0.67 0.893398
Target:  5'- cGCCGGcUGCGgUUccUGCGguUugGggGCCg -3'
miRNA:   3'- -UGGCCcACGCgGA--ACGC--AugCuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.