miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6774 5' -53 NC_001875.2 + 89164 0.9 0.074844
Target:  5'- cGCGGUUUCGUgcACGCUGGCGCAAAUc -3'
miRNA:   3'- -CGCCAAAGCAgcUGCGACCGCGUUUA- -5'
6774 5' -53 NC_001875.2 + 60982 0.79 0.369737
Target:  5'- aGCGG----GUCGGCGCUGGCGCAc-- -3'
miRNA:   3'- -CGCCaaagCAGCUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 30240 0.79 0.378157
Target:  5'- cGUGGUcgCGUUGACGCUGGC-CAGGUc -3'
miRNA:   3'- -CGCCAaaGCAGCUGCGACCGcGUUUA- -5'
6774 5' -53 NC_001875.2 + 114219 0.75 0.54917
Target:  5'- gGCGGUacguaauagUCGUCGuCGCUGGaCGCGGGc -3'
miRNA:   3'- -CGCCAa--------AGCAGCuGCGACC-GCGUUUa -5'
6774 5' -53 NC_001875.2 + 63454 0.75 0.569912
Target:  5'- uCGGUUU-GUCGGCGUUGGUGCGu-- -3'
miRNA:   3'- cGCCAAAgCAGCUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 93858 0.73 0.643584
Target:  5'- aCGGU--UGUCGGCGCUGaGCGCGc-- -3'
miRNA:   3'- cGCCAaaGCAGCUGCGAC-CGCGUuua -5'
6774 5' -53 NC_001875.2 + 125013 0.73 0.643584
Target:  5'- uCGGgcacgUUGUCGACGC-GGCGCAGc- -3'
miRNA:   3'- cGCCaa---AGCAGCUGCGaCCGCGUUua -5'
6774 5' -53 NC_001875.2 + 261 0.73 0.664674
Target:  5'- gGCGGggUCGUUGuauUGCUGGCGUc--- -3'
miRNA:   3'- -CGCCaaAGCAGCu--GCGACCGCGuuua -5'
6774 5' -53 NC_001875.2 + 56341 0.73 0.675181
Target:  5'- aGCGGUaugCGccugCGACGCaGGCGCGAc- -3'
miRNA:   3'- -CGCCAaa-GCa---GCUGCGaCCGCGUUua -5'
6774 5' -53 NC_001875.2 + 10869 0.73 0.685651
Target:  5'- cGCGGUggccgCGUCGgugGCGCUGccGCGCAAc- -3'
miRNA:   3'- -CGCCAaa---GCAGC---UGCGAC--CGCGUUua -5'
6774 5' -53 NC_001875.2 + 113357 0.72 0.70644
Target:  5'- cGCGGcugcgUCGcugCGGCGC-GGCGCAAAa -3'
miRNA:   3'- -CGCCaa---AGCa--GCUGCGaCCGCGUUUa -5'
6774 5' -53 NC_001875.2 + 42707 0.72 0.70644
Target:  5'- cGCGGUUUCGU--ACGCaaGGCGCAc-- -3'
miRNA:   3'- -CGCCAAAGCAgcUGCGa-CCGCGUuua -5'
6774 5' -53 NC_001875.2 + 7392 0.72 0.716739
Target:  5'- cGCGGUUgCG-CGACGC-GGuCGCAAAa -3'
miRNA:   3'- -CGCCAAaGCaGCUGCGaCC-GCGUUUa -5'
6774 5' -53 NC_001875.2 + 3821 0.72 0.747132
Target:  5'- cCGGccgUCGUCGGCGCacgccGGCGCGGc- -3'
miRNA:   3'- cGCCaa-AGCAGCUGCGa----CCGCGUUua -5'
6774 5' -53 NC_001875.2 + 36526 0.72 0.747132
Target:  5'- uGauGUUUCGccaaaCGGCGCUGGCGCGc-- -3'
miRNA:   3'- -CgcCAAAGCa----GCUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 85289 0.71 0.766874
Target:  5'- aCGGUUUgCGcgggCGGCGCgGGCGCGGGc -3'
miRNA:   3'- cGCCAAA-GCa---GCUGCGaCCGCGUUUa -5'
6774 5' -53 NC_001875.2 + 87904 0.71 0.776559
Target:  5'- aUGGUcaagUUGUgGACGCUGGUGCGc-- -3'
miRNA:   3'- cGCCAa---AGCAgCUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 68748 0.71 0.776559
Target:  5'- aGCGGUUgcUCGaC-ACGCUGGUGCAc-- -3'
miRNA:   3'- -CGCCAA--AGCaGcUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 74499 0.71 0.786106
Target:  5'- uGCGGUUUCGcCGcgcgcaGCGCUGcCGCAAc- -3'
miRNA:   3'- -CGCCAAAGCaGC------UGCGACcGCGUUua -5'
6774 5' -53 NC_001875.2 + 75624 0.7 0.804747
Target:  5'- gGCGuUggCGUCGGCGUUGGCGUc--- -3'
miRNA:   3'- -CGCcAaaGCAGCUGCGACCGCGuuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.