miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6774 5' -53 NC_001875.2 + 261 0.73 0.664674
Target:  5'- gGCGGggUCGUUGuauUGCUGGCGUc--- -3'
miRNA:   3'- -CGCCaaAGCAGCu--GCGACCGCGuuua -5'
6774 5' -53 NC_001875.2 + 2544 0.66 0.968152
Target:  5'- cCGGUgaacaaCGGCGCgucgGGCGCAAAc -3'
miRNA:   3'- cGCCAaagca-GCUGCGa---CCGCGUUUa -5'
6774 5' -53 NC_001875.2 + 3215 0.69 0.886609
Target:  5'- gGCGGUUggauggCGUgGGCGCguUGGCGUu--- -3'
miRNA:   3'- -CGCCAAa-----GCAgCUGCG--ACCGCGuuua -5'
6774 5' -53 NC_001875.2 + 3821 0.72 0.747132
Target:  5'- cCGGccgUCGUCGGCGCacgccGGCGCGGc- -3'
miRNA:   3'- cGCCaa-AGCAGCUGCGa----CCGCGUUua -5'
6774 5' -53 NC_001875.2 + 7392 0.72 0.716739
Target:  5'- cGCGGUUgCG-CGACGC-GGuCGCAAAa -3'
miRNA:   3'- -CGCCAAaGCaGCUGCGaCC-GCGUUUa -5'
6774 5' -53 NC_001875.2 + 10869 0.73 0.685651
Target:  5'- cGCGGUggccgCGUCGgugGCGCUGccGCGCAAc- -3'
miRNA:   3'- -CGCCAaa---GCAGC---UGCGAC--CGCGUUua -5'
6774 5' -53 NC_001875.2 + 20811 0.66 0.967836
Target:  5'- cGCGGgcgUCGUCGcaGCGCuugucgaccaaacUGGUGUAGc- -3'
miRNA:   3'- -CGCCaa-AGCAGC--UGCG-------------ACCGCGUUua -5'
6774 5' -53 NC_001875.2 + 26002 0.69 0.886609
Target:  5'- cGUGGUggcCGUCGGCGCcugGGCGg---- -3'
miRNA:   3'- -CGCCAaa-GCAGCUGCGa--CCGCguuua -5'
6774 5' -53 NC_001875.2 + 30240 0.79 0.378157
Target:  5'- cGUGGUcgCGUUGACGCUGGC-CAGGUc -3'
miRNA:   3'- -CGCCAaaGCAGCUGCGACCGcGUUUA- -5'
6774 5' -53 NC_001875.2 + 33227 0.67 0.930168
Target:  5'- cGCGGgcUCGccgggcgccguuUCGGCGC-GGCGCu--- -3'
miRNA:   3'- -CGCCaaAGC------------AGCUGCGaCCGCGuuua -5'
6774 5' -53 NC_001875.2 + 33401 0.68 0.90678
Target:  5'- cGCGGUagCGcUCGugGCugagcUGGCGCu--- -3'
miRNA:   3'- -CGCCAaaGC-AGCugCG-----ACCGCGuuua -5'
6774 5' -53 NC_001875.2 + 35858 0.67 0.945041
Target:  5'- cGCGGUUUUGUUG-CGCa-GCGCGu-- -3'
miRNA:   3'- -CGCCAAAGCAGCuGCGacCGCGUuua -5'
6774 5' -53 NC_001875.2 + 36526 0.72 0.747132
Target:  5'- uGauGUUUCGccaaaCGGCGCUGGCGCGc-- -3'
miRNA:   3'- -CgcCAAAGCa----GCUGCGACCGCGUuua -5'
6774 5' -53 NC_001875.2 + 37881 0.67 0.930168
Target:  5'- gGCGGgccgCGccagCGGCuuGCUGGCGCGGc- -3'
miRNA:   3'- -CGCCaaa-GCa---GCUG--CGACCGCGUUua -5'
6774 5' -53 NC_001875.2 + 38556 0.7 0.839958
Target:  5'- -gGGUUgcugCGUCGGCGC-GGCGUg--- -3'
miRNA:   3'- cgCCAAa---GCAGCUGCGaCCGCGuuua -5'
6774 5' -53 NC_001875.2 + 39669 0.66 0.953704
Target:  5'- cGUGGcUUCGUCGAaaacaaagccCGC-GGUGCAAu- -3'
miRNA:   3'- -CGCCaAAGCAGCU----------GCGaCCGCGUUua -5'
6774 5' -53 NC_001875.2 + 41661 0.66 0.949496
Target:  5'- uUGGUaguuaaguugauUUCGUUGuuGCUGGCGUAGc- -3'
miRNA:   3'- cGCCA------------AAGCAGCugCGACCGCGUUua -5'
6774 5' -53 NC_001875.2 + 42357 0.69 0.886609
Target:  5'- aGCGGUUg---CGGCGCgagGGCGCc--- -3'
miRNA:   3'- -CGCCAAagcaGCUGCGa--CCGCGuuua -5'
6774 5' -53 NC_001875.2 + 42707 0.72 0.70644
Target:  5'- cGCGGUUUCGU--ACGCaaGGCGCAc-- -3'
miRNA:   3'- -CGCCAAAGCAgcUGCGa-CCGCGUuua -5'
6774 5' -53 NC_001875.2 + 43860 0.66 0.949496
Target:  5'- cGCGGg--CGUCGcguACGCgGGCGUu--- -3'
miRNA:   3'- -CGCCaaaGCAGC---UGCGaCCGCGuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.