miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 40427 0.68 0.978182
Target:  5'- cGAGGgGC--UGACgCGCGCCAUCgAGa -3'
miRNA:   3'- uUUUCgUGuaAUUG-GCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 79375 0.68 0.978182
Target:  5'- ----cCACAUUAGCUGCGUCAgUUCGGg -3'
miRNA:   3'- uuuucGUGUAAUUGGCGCGGU-AGGUC- -5'
6779 3' -49.7 NC_001875.2 + 37114 0.68 0.975306
Target:  5'- -cGGGCGCGgc-GCCGCGCCGgcguuugcgucuuUCCGc -3'
miRNA:   3'- uuUUCGUGUaauUGGCGCGGU-------------AGGUc -5'
6779 3' -49.7 NC_001875.2 + 32843 0.68 0.972755
Target:  5'- --uGGCACcaaAACCugGUGCCGUCCGGc -3'
miRNA:   3'- uuuUCGUGuaaUUGG--CGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 74149 0.68 0.972755
Target:  5'- cGAGGGCGCGgcgcCCGcCGCCG-CCAGc -3'
miRNA:   3'- -UUUUCGUGUaauuGGC-GCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 16371 0.68 0.969703
Target:  5'- ---cGC-CAaUGGCCGCGCCcgCUAGc -3'
miRNA:   3'- uuuuCGuGUaAUUGGCGCGGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 43423 0.68 0.969703
Target:  5'- ---uGCGCGUgcguGCCGUccucgGCCAUCCAc -3'
miRNA:   3'- uuuuCGUGUAau--UGGCG-----CGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 26774 0.68 0.969703
Target:  5'- --uAGCACucGUUGAgcgaCGCGCCGUCgAGg -3'
miRNA:   3'- uuuUCGUG--UAAUUg---GCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 95991 0.68 0.969703
Target:  5'- ---uGCGCAacaaAACCGCGUCGUCgAGu -3'
miRNA:   3'- uuuuCGUGUaa--UUGGCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 119017 0.68 0.966415
Target:  5'- ----cUACGUggccAACCGCGCCAUCUAc -3'
miRNA:   3'- uuuucGUGUAa---UUGGCGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 99354 0.68 0.966415
Target:  5'- ---cGCGCAacUUGGgCGCGCCcgCCAa -3'
miRNA:   3'- uuuuCGUGU--AAUUgGCGCGGuaGGUc -5'
6779 3' -49.7 NC_001875.2 + 110665 0.68 0.966415
Target:  5'- cGGGAGCAUuggcUUGACCaGCGCCG-CCAu -3'
miRNA:   3'- -UUUUCGUGu---AAUUGG-CGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 77687 0.68 0.966415
Target:  5'- -cGAGCGCGUauuugcgcGACUGcCGCCGUCCGc -3'
miRNA:   3'- uuUUCGUGUAa-------UUGGC-GCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 9522 0.68 0.966415
Target:  5'- -uGGGCGCGgaAGCCGCGCCcgaUAGg -3'
miRNA:   3'- uuUUCGUGUaaUUGGCGCGGuagGUC- -5'
6779 3' -49.7 NC_001875.2 + 128739 0.69 0.962882
Target:  5'- ---uGCGCGcgAGCCGCGCC--CCGGc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 123921 0.69 0.955058
Target:  5'- -uGAGCGCc---ACCGCGUCuUCCAGc -3'
miRNA:   3'- uuUUCGUGuaauUGGCGCGGuAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 21201 0.69 0.950755
Target:  5'- --cGGCACG---GCCaGCGCCA-CCAGg -3'
miRNA:   3'- uuuUCGUGUaauUGG-CGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 47124 0.7 0.941345
Target:  5'- uGAAGCACcugGACCcguaccCGCUAUCCAGa -3'
miRNA:   3'- uUUUCGUGuaaUUGGc-----GCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 96320 0.7 0.936232
Target:  5'- --cAGCACcgUGGCCGCGUCAUa--- -3'
miRNA:   3'- uuuUCGUGuaAUUGGCGCGGUAgguc -5'
6779 3' -49.7 NC_001875.2 + 21958 0.7 0.936232
Target:  5'- --cGGCGCGgggaugGGCgGCGCCAgcgCCAGc -3'
miRNA:   3'- uuuUCGUGUaa----UUGgCGCGGUa--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.