miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 11805 0.66 0.878485
Target:  5'- uUGcCGGCCGCgucgguguuugUGGUc-GCGCCGGUg -3'
miRNA:   3'- gGCuGCUGGUGa----------ACCAacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 82267 0.66 0.862522
Target:  5'- gUCGGCGcgcaGCUGCUUGGccacuacaauucUGGCGUCGGg -3'
miRNA:   3'- -GGCUGC----UGGUGAACCa-----------ACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 127044 0.66 0.840802
Target:  5'- gCUGGCGACag-------GGCGCCGGCu -3'
miRNA:   3'- -GGCUGCUGgugaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 51190 0.66 0.856472
Target:  5'- gCCcACGACgGCgcGGUucUGGCGCCGc- -3'
miRNA:   3'- -GGcUGCUGgUGaaCCA--ACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 114741 0.66 0.840802
Target:  5'- --uGCGGCCGCcag--UGGCGCgCGGCu -3'
miRNA:   3'- ggcUGCUGGUGaaccaACCGCG-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 73706 0.66 0.848733
Target:  5'- gCGGCGGCUGCggcuGUUGGgGuuGGUc -3'
miRNA:   3'- gGCUGCUGGUGaac-CAACCgCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 65769 0.66 0.848733
Target:  5'- gCCGGCGGCugggcgagCACgcgcgcGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUG--------GUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 28600 0.66 0.878485
Target:  5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3'
miRNA:   3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 77628 0.66 0.870629
Target:  5'- aUCGGCGGCaacgGCUcgGGUcUGGUGCCgaacccgGGCg -3'
miRNA:   3'- -GGCUGCUGg---UGAa-CCA-ACCGCGG-------CCG- -5'
6780 3' -57.2 NC_001875.2 + 31238 0.66 0.840802
Target:  5'- aCaGCGGCCGC--GGccGGCGCCcGGCc -3'
miRNA:   3'- gGcUGCUGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 109846 0.66 0.878485
Target:  5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3'
miRNA:   3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 128762 0.66 0.840802
Target:  5'- gCCGAgGACCcCUUcuugGGCcCCGGCa -3'
miRNA:   3'- -GGCUgCUGGuGAAccaaCCGcGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 56679 0.66 0.870629
Target:  5'- gUGACuacauuaGACCGCUgugcaacGGUUGGCcgagGCCGcGCg -3'
miRNA:   3'- gGCUG-------CUGGUGAa------CCAACCG----CGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 65434 0.66 0.878485
Target:  5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3'
miRNA:   3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 57689 0.66 0.864015
Target:  5'- gCUGGCGGCgGCg-----GGCGCCGcGCc -3'
miRNA:   3'- -GGCUGCUGgUGaaccaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 41140 0.67 0.832687
Target:  5'- aCCGGCGGCC---------GCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGugaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 8229 0.67 0.79853
Target:  5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3'
miRNA:   3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 69208 0.67 0.815933
Target:  5'- gCCGACGGCCaguacGCUUGuucgGGCGaCGcGCg -3'
miRNA:   3'- -GGCUGCUGG-----UGAACcaa-CCGCgGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 50723 0.67 0.832687
Target:  5'- gCCGGCGACUACUguuacUGGCccaaCUGGCc -3'
miRNA:   3'- -GGCUGCUGGUGAacca-ACCGc---GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 119536 0.67 0.832687
Target:  5'- gCGuuGACCACgcacacGGcgGcGUGCCGGCu -3'
miRNA:   3'- gGCugCUGGUGaa----CCaaC-CGCGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.