miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 15925 0.66 0.878485
Target:  5'- aCCGGCaacauGACCcaGC-UGGcggGGCGCCaGCa -3'
miRNA:   3'- -GGCUG-----CUGG--UGaACCaa-CCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 10865 0.66 0.864015
Target:  5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3'
miRNA:   3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 83368 0.66 0.851852
Target:  5'- gUCGGCGGCgcuaaaCACUUgcaaacaguaucgcgGGUUGGuCGCCauGGCg -3'
miRNA:   3'- -GGCUGCUG------GUGAA---------------CCAACC-GCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 28600 0.66 0.878485
Target:  5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3'
miRNA:   3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 68699 0.66 0.871354
Target:  5'- cCCGugGACC-Cgu-----GCGCCGGCc -3'
miRNA:   3'- -GGCugCUGGuGaaccaacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 43985 0.66 0.839999
Target:  5'- gCCGACcGCCACggacagcccgacgGGCGCCGuGCc -3'
miRNA:   3'- -GGCUGcUGGUGaaccaa-------CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 58022 0.66 0.848733
Target:  5'- aCCGAuaCGACUACaacgUGGgcGGCGCgCuGCc -3'
miRNA:   3'- -GGCU--GCUGGUGa---ACCaaCCGCG-GcCG- -5'
6780 3' -57.2 NC_001875.2 + 110681 0.66 0.855707
Target:  5'- gCCGaaaagaaGCGGCCGC--GGagGGCGCCGcGUu -3'
miRNA:   3'- -GGC-------UGCUGGUGaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 72574 0.66 0.856472
Target:  5'- gCG-CGGgCGCUgcgGGUgcgGGCGCUgcgGGCg -3'
miRNA:   3'- gGCuGCUgGUGAa--CCAa--CCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 65434 0.66 0.878485
Target:  5'- uCCGGCGugCACc--GcUGGCGgUCGGUg -3'
miRNA:   3'- -GGCUGCugGUGaacCaACCGC-GGCCG- -5'
6780 3' -57.2 NC_001875.2 + 10664 0.66 0.871354
Target:  5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3'
miRNA:   3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 94274 0.66 0.856472
Target:  5'- --uGCGAUUA--UGGUuuccuUGGCGCCGGUa -3'
miRNA:   3'- ggcUGCUGGUgaACCA-----ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 114027 0.66 0.878485
Target:  5'- aUGGCGGCCGCgcGGUccagaUGGUagcacGCgGGCu -3'
miRNA:   3'- gGCUGCUGGUGaaCCA-----ACCG-----CGgCCG- -5'
6780 3' -57.2 NC_001875.2 + 31573 0.66 0.848733
Target:  5'- gUCG-CGugCACgaguuaagggUGGUguccGGCGCCGuGCc -3'
miRNA:   3'- -GGCuGCugGUGa---------ACCAa---CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 40464 0.66 0.856472
Target:  5'- cCCGAgGGCg---UGG-UGGUGCCGGg -3'
miRNA:   3'- -GGCUgCUGgugaACCaACCGCGGCCg -5'
6780 3' -57.2 NC_001875.2 + 105212 0.66 0.848733
Target:  5'- gCCGugGcGCCcucgucauGCUUGGgcggccugucaUGGCGCCaGGUg -3'
miRNA:   3'- -GGCugC-UGG--------UGAACCa----------ACCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 48386 0.66 0.856472
Target:  5'- uCCGACG-CgGCgaca--GGUGCCGGCu -3'
miRNA:   3'- -GGCUGCuGgUGaaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 109846 0.66 0.878485
Target:  5'- gCCGGCGgauuuGCUGCgcGcGUuugccaagcUGGCGCUGGCg -3'
miRNA:   3'- -GGCUGC-----UGGUGaaC-CA---------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 21592 0.66 0.859513
Target:  5'- aCGugGACCACUUGaacagcgacaugGGUGUggUGGCu -3'
miRNA:   3'- gGCugCUGGUGAACcaa---------CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 31961 0.66 0.861022
Target:  5'- gCCGGCGACgACgaacgcgugUGGCGCgcguaCGGCc -3'
miRNA:   3'- -GGCUGCUGgUGaacca----ACCGCG-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.