miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 873 0.68 0.780543
Target:  5'- uCCGuuGACCACUUug--GGCGCgagaaCGGCg -3'
miRNA:   3'- -GGCugCUGGUGAAccaaCCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 1507 0.71 0.602729
Target:  5'- gCGACGACC-CUgccuuuugGGUgcgGGCGCucucgaaCGGCg -3'
miRNA:   3'- gGCUGCUGGuGAa-------CCAa--CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 2648 0.7 0.623889
Target:  5'- aCGgacACGuCUACUUGc--GGCGCCGGCg -3'
miRNA:   3'- gGC---UGCuGGUGAACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 3182 0.72 0.510953
Target:  5'- gCCGGCGGCCGCgcaccagagacaGGUU-GCGgCGGCg -3'
miRNA:   3'- -GGCUGCUGGUGaa----------CCAAcCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 5306 0.71 0.604742
Target:  5'- cCCGACGACCACUccauugcgcgcuaccUgcucgccgagugcgGGgcGGUGCUGGUc -3'
miRNA:   3'- -GGCUGCUGGUGA---------------A--------------CCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 7379 0.68 0.77135
Target:  5'- gCCGGauCGGCCACgcGGUUGcGCGaCgCGGUc -3'
miRNA:   3'- -GGCU--GCUGGUGaaCCAAC-CGC-G-GCCG- -5'
6780 3' -57.2 NC_001875.2 + 8229 0.67 0.79853
Target:  5'- gUCGAcuuCGAUCACUUuuuugGGCaGCCGGCg -3'
miRNA:   3'- -GGCU---GCUGGUGAAccaa-CCG-CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 9045 0.74 0.422883
Target:  5'- gCCGcCGGCCGCgccGGUUuccGCGCCGGUu -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCAAc--CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 9791 0.69 0.733463
Target:  5'- uCCGGgGugUACUUGcacGGCGCCaucGGCg -3'
miRNA:   3'- -GGCUgCugGUGAACcaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 10664 0.66 0.871354
Target:  5'- gCGGCGGacugCACUUGGcgcaGGCGCUGccGCa -3'
miRNA:   3'- gGCUGCUg---GUGAACCaa--CCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 10865 0.66 0.864015
Target:  5'- aCGACGcggugGCCGCgucGG-UGGCGCUGccGCg -3'
miRNA:   3'- gGCUGC-----UGGUGaa-CCaACCGCGGC--CG- -5'
6780 3' -57.2 NC_001875.2 + 11077 0.69 0.694208
Target:  5'- gCGACGAgCACUUcgcGGUUGGaCGUUuggGGCu -3'
miRNA:   3'- gGCUGCUgGUGAA---CCAACC-GCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 11614 0.69 0.684247
Target:  5'- gCGGCGugGCCACgaaugGGUUGGCGC--GCa -3'
miRNA:   3'- gGCUGC--UGGUGaa---CCAACCGCGgcCG- -5'
6780 3' -57.2 NC_001875.2 + 11805 0.66 0.878485
Target:  5'- uUGcCGGCCGCgucgguguuugUGGUc-GCGCCGGUg -3'
miRNA:   3'- gGCuGCUGGUGa----------ACCAacCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 11981 0.68 0.789605
Target:  5'- aCUGGCGACgGCgUUGGgcgcgGGUGUggUGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-AACCaa---CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 12842 0.68 0.740208
Target:  5'- cCCGGCGGCgccggcuagCACgcagccgUGGUUGGUcguguuggcaaacaGCCGGUu -3'
miRNA:   3'- -GGCUGCUG---------GUGa------ACCAACCG--------------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 13149 0.68 0.743085
Target:  5'- gCGAcaCGACCACgcGGUaGGCGUcgccgaacaCGGCg -3'
miRNA:   3'- gGCU--GCUGGUGaaCCAaCCGCG---------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 14486 0.66 0.870629
Target:  5'- cCCGACGGCCAgccggccCgccGGUUcgcccGCGCCGcGCc -3'
miRNA:   3'- -GGCUGCUGGU-------Gaa-CCAAc----CGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 15925 0.66 0.878485
Target:  5'- aCCGGCaacauGACCcaGC-UGGcggGGCGCCaGCa -3'
miRNA:   3'- -GGCUG-----CUGG--UGaACCaa-CCGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 16281 0.71 0.613805
Target:  5'- cCCGGCGACCGCac-GUccaUGuGCGCCaGCa -3'
miRNA:   3'- -GGCUGCUGGUGaacCA---AC-CGCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.