miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 5306 0.71 0.604742
Target:  5'- cCCGACGACCACUccauugcgcgcuaccUgcucgccgagugcgGGgcGGUGCUGGUc -3'
miRNA:   3'- -GGCUGCUGGUGA---------------A--------------CCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75325 0.73 0.476932
Target:  5'- nCGAUGGCguCggugUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGguG----AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 53870 0.73 0.495701
Target:  5'- aCCGuCGGCCugUUGGUcgugcGGCcGCCgcGGCg -3'
miRNA:   3'- -GGCuGCUGGugAACCAa----CCG-CGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 117363 0.72 0.514797
Target:  5'- gCCGGCuGGCCGucgGGgaGGCGCCGaGCu -3'
miRNA:   3'- -GGCUG-CUGGUgaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 40127 0.72 0.534185
Target:  5'- gCCGACGGCCGucacCUccaUGGgcUGGCaccgcacgGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGU----GA---ACCa-ACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 54575 0.71 0.573676
Target:  5'- gCGGCGGCCGCUUcgcccGGcgGcGCGCCcacGGCg -3'
miRNA:   3'- gGCUGCUGGUGAA-----CCaaC-CGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 103114 0.71 0.573676
Target:  5'- aUCGugGcUCGCUUGGc-GGCGgCGGCg -3'
miRNA:   3'- -GGCugCuGGUGAACCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 107513 0.71 0.593686
Target:  5'- gCCG-CGGCaCGCUU-GUUGGCGCCGu- -3'
miRNA:   3'- -GGCuGCUG-GUGAAcCAACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 56860 0.71 0.593686
Target:  5'- gUGAUGAacaGCUUGGUguuUGGCugcuaGCCGGCa -3'
miRNA:   3'- gGCUGCUgg-UGAACCA---ACCG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 65704 0.73 0.476932
Target:  5'- gCCGGcCGACCACUguuccgcGGgcGGCGCCGc- -3'
miRNA:   3'- -GGCU-GCUGGUGAa------CCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 90819 0.73 0.458522
Target:  5'- uCC-ACGGCCACgcGGUUGGCGaCCuGCu -3'
miRNA:   3'- -GGcUGCUGGUGaaCCAACCGC-GGcCG- -5'
6780 3' -57.2 NC_001875.2 + 75478 0.74 0.422883
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 18171 0.79 0.241877
Target:  5'- gCGACGccGCCACUgUGGc-GGUGCCGGCg -3'
miRNA:   3'- gGCUGC--UGGUGA-ACCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75291 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75393 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75441 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 70204 0.77 0.305316
Target:  5'- aCGGCGACCACUg----GGCGCCcgaGGCg -3'
miRNA:   3'- gGCUGCUGGUGAaccaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 75651 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75675 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75238 0.75 0.397271
Target:  5'- aCGGCGACgGCgaUGGcggcGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGgUGa-ACCaa--CCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.