miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 81963 1.13 0.001147
Target:  5'- uCCGACGACCACUUGGUUGGCGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGUGAACCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75597 0.79 0.230588
Target:  5'- gUCGGCGAUgGCgucgGcGUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaa--C-CAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 18171 0.79 0.241877
Target:  5'- gCGACGccGCCACUgUGGc-GGUGCCGGCg -3'
miRNA:   3'- gGCUGC--UGGUGA-ACCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 61590 0.77 0.291675
Target:  5'- gCGGCGACgGCUcg---GGCGCCGGCg -3'
miRNA:   3'- gGCUGCUGgUGAaccaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75291 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75393 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75441 0.77 0.297753
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 70204 0.77 0.305316
Target:  5'- aCGGCGACCACUg----GGCGCCcgaGGCg -3'
miRNA:   3'- gGCUGCUGGUGAaccaaCCGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 75651 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75675 0.75 0.388959
Target:  5'- gUCGGCGAUgGC---GUUGGCGUCGGCg -3'
miRNA:   3'- -GGCUGCUGgUGaacCAACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 125949 0.75 0.397271
Target:  5'- gCUGuACGACUACaUGGUUcGGCGCauCGGCg -3'
miRNA:   3'- -GGC-UGCUGGUGaACCAA-CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 75238 0.75 0.397271
Target:  5'- aCGGCGACgGCgaUGGcggcGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGgUGa-ACCaa--CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75478 0.74 0.422883
Target:  5'- aUGGCGuCgGCgUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCuGgUG-AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 9045 0.74 0.422883
Target:  5'- gCCGcCGGCCGCgccGGUUuccGCGCCGGUu -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCAAc--CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 90819 0.73 0.458522
Target:  5'- uCC-ACGGCCACgcGGUUGGCGaCCuGCu -3'
miRNA:   3'- -GGcUGCUGGUGaaCCAACCGC-GGcCG- -5'
6780 3' -57.2 NC_001875.2 + 125338 0.73 0.476932
Target:  5'- aCGGCGGCCAgCgu-GUUGGCG-CGGCa -3'
miRNA:   3'- gGCUGCUGGU-GaacCAACCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 75325 0.73 0.476932
Target:  5'- nCGAUGGCguCggugUUGGUgaUGGCGUCGGCg -3'
miRNA:   3'- gGCUGCUGguG----AACCA--ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 65704 0.73 0.476932
Target:  5'- gCCGGcCGACCACUguuccgcGGgcGGCGCCGc- -3'
miRNA:   3'- -GGCU-GCUGGUGAa------CCaaCCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 53870 0.73 0.495701
Target:  5'- aCCGuCGGCCugUUGGUcgugcGGCcGCCgcGGCg -3'
miRNA:   3'- -GGCuGCUGGugAACCAa----CCG-CGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 101150 0.73 0.50521
Target:  5'- aCGAuuuCGACCACgUGGccgugcgcgUGGCGCUGGUc -3'
miRNA:   3'- gGCU---GCUGGUGaACCa--------ACCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.