miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 18171 0.79 0.241877
Target:  5'- gCGACGccGCCACUgUGGc-GGUGCCGGCg -3'
miRNA:   3'- gGCUGC--UGGUGA-ACCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 19119 0.7 0.633978
Target:  5'- uUCGACGagGCCACgcucgUGGgccaaGCGCUGGCc -3'
miRNA:   3'- -GGCUGC--UGGUGa----ACCaac--CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 20282 0.68 0.752613
Target:  5'- aCGACGcuugugGCCACgccgGGgaacuggUGGUGCUGGUc -3'
miRNA:   3'- gGCUGC------UGGUGaa--CCa------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 20740 0.68 0.762038
Target:  5'- gCCGugcACG-CCGCaacaaaaGGUUuucacGGCGCCGGCg -3'
miRNA:   3'- -GGC---UGCuGGUGaa-----CCAA-----CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 21592 0.66 0.859513
Target:  5'- aCGugGACCACUUGaacagcgacaugGGUGUggUGGCu -3'
miRNA:   3'- gGCugCUGGUGAACcaa---------CCGCG--GCCG- -5'
6780 3' -57.2 NC_001875.2 + 22715 0.69 0.733463
Target:  5'- gUCGuCG-CCACUgUGGccuacUUGuGCGCCGGCc -3'
miRNA:   3'- -GGCuGCuGGUGA-ACC-----AAC-CGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 24098 0.68 0.789605
Target:  5'- --uGCGGCCuguaaaaauuACUauugauUGGUUGGCGCaaaGGCg -3'
miRNA:   3'- ggcUGCUGG----------UGA------ACCAACCGCGg--CCG- -5'
6780 3' -57.2 NC_001875.2 + 27787 0.68 0.789605
Target:  5'- aCGcCGACCACaaaucGGUUGGgGUugaugCGGCa -3'
miRNA:   3'- gGCuGCUGGUGaa---CCAACCgCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 28600 0.66 0.878485
Target:  5'- aCCGccuACGAaaACcUGGUUGaGCgcaagGCCGGCg -3'
miRNA:   3'- -GGC---UGCUggUGaACCAAC-CG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 29271 0.68 0.770424
Target:  5'- gCCGcCGACCGCgccGGcggGGCGCggucgugUGGCg -3'
miRNA:   3'- -GGCuGCUGGUGaa-CCaa-CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 29778 0.69 0.723756
Target:  5'- aUGuACGGCCGCgggUGGacgGGCgugucaggcuacGCCGGCg -3'
miRNA:   3'- gGC-UGCUGGUGa--ACCaa-CCG------------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 30223 0.71 0.612798
Target:  5'- gUGGCGACCACUuuguacgUGGUcgcguUGaCGCUGGCc -3'
miRNA:   3'- gGCUGCUGGUGA-------ACCA-----ACcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 30639 0.68 0.77135
Target:  5'- gCCGuCGACaaACggcaaGUUgGGCGCCGGCa -3'
miRNA:   3'- -GGCuGCUGg-UGaac--CAA-CCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 31238 0.66 0.840802
Target:  5'- aCaGCGGCCGC--GGccGGCGCCcGGCc -3'
miRNA:   3'- gGcUGCUGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 31542 0.68 0.762038
Target:  5'- aCGGC-ACCACUUgcacgcgcugcaGGUUGG-GCCcGGCg -3'
miRNA:   3'- gGCUGcUGGUGAA------------CCAACCgCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 31573 0.66 0.848733
Target:  5'- gUCG-CGugCACgaguuaagggUGGUguccGGCGCCGuGCc -3'
miRNA:   3'- -GGCuGCugGUGa---------ACCAa---CCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 31688 0.7 0.674244
Target:  5'- gCCGGCGuggaccGCCGCUUGcgcGcCGCCGGCg -3'
miRNA:   3'- -GGCUGC------UGGUGAACcaaCcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 31961 0.66 0.861022
Target:  5'- gCCGGCGACgACgaacgcgugUGGCGCgcguaCGGCc -3'
miRNA:   3'- -GGCUGCUGgUGaacca----ACCGCG-----GCCG- -5'
6780 3' -57.2 NC_001875.2 + 32471 0.68 0.752613
Target:  5'- gCGGCGcuuugGCCACUUGGcgGGCGCgcccaaguugcgCGGa -3'
miRNA:   3'- gGCUGC-----UGGUGAACCaaCCGCG------------GCCg -5'
6780 3' -57.2 NC_001875.2 + 37092 0.68 0.7611
Target:  5'- aCGACaccGCCGCgUGGgugUGcgggcgcggcgccGCGCCGGCg -3'
miRNA:   3'- gGCUGc--UGGUGaACCa--AC-------------CGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.