miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 46180 0.7 0.761598
Target:  5'- aGGCCGGCGCGCccacAAuuaagcuaaaucgcGAGGAcacGGUGAAc -3'
miRNA:   3'- gCCGGCCGCGCG----UU--------------UUUCU---UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 49860 0.7 0.752669
Target:  5'- cCGGCCGGCGCGCcuugcc-GGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 50365 0.66 0.949017
Target:  5'- gGGCCGcGCGCGCcacu-GAccGCGGAc -3'
miRNA:   3'- gCCGGC-CGCGCGuuuuuCUu-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 50486 0.66 0.929469
Target:  5'- gCGGCCGGCGCGUgcgc----GCGGc- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 57578 0.68 0.878141
Target:  5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3'
miRNA:   3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 58897 0.68 0.854891
Target:  5'- aGGCCGcgaacGCGCGCuacGAAGccGCGGAc -3'
miRNA:   3'- gCCGGC-----CGCGCGuu-UUUCuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 59011 0.66 0.929469
Target:  5'- gCGaGCUGGCcacugaaaacgaGCGCcu-GAGggGCGAAa -3'
miRNA:   3'- -GC-CGGCCG------------CGCGuuuUUCuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 59083 0.67 0.918156
Target:  5'- uGGCCGGCGCGgAAAcGGuuuccAGGCuGAc- -3'
miRNA:   3'- gCCGGCCGCGCgUUUuUC-----UUCG-CUua -5'
6780 5' -53.6 NC_001875.2 + 60208 0.74 0.576909
Target:  5'- uGcGCCGGCG-GCAGAuuGAAGCGGc- -3'
miRNA:   3'- gC-CGGCCGCgCGUUUuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 61437 0.67 0.918156
Target:  5'- uGGCCGGCuCGCAGccGGGAuCGAc- -3'
miRNA:   3'- gCCGGCCGcGCGUUuuUCUUcGCUua -5'
6780 5' -53.6 NC_001875.2 + 61736 0.71 0.703664
Target:  5'- uCGGCCGGCugcgGCGCAAAGGGGucaaacguuGGCa--- -3'
miRNA:   3'- -GCCGGCCG----CGCGUUUUUCU---------UCGcuua -5'
6780 5' -53.6 NC_001875.2 + 62399 0.76 0.42757
Target:  5'- uGGCCGGCGCGCAAAcgccGGCGu-- -3'
miRNA:   3'- gCCGGCCGCGCGUUUuucuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 63131 0.66 0.944512
Target:  5'- gCGGCCgGGCGCGCGGcc-GgcGCa--- -3'
miRNA:   3'- -GCCGG-CCGCGCGUUuuuCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 64727 0.68 0.870619
Target:  5'- uGGCCaaGGCGgGCGAcguGGGcGAAGCGAu- -3'
miRNA:   3'- gCCGG--CCGCgCGUU---UUU-CUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 67705 0.68 0.885426
Target:  5'- uGGCCGGCG-GCcuGAGGggGUu--- -3'
miRNA:   3'- gCCGGCCGCgCGuuUUUCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 70352 0.84 0.154543
Target:  5'- cCGaGCCGGCGCGCAAAAGGGugaaggaaaacuacaAGCGggUg -3'
miRNA:   3'- -GC-CGGCCGCGCGUUUUUCU---------------UCGCuuA- -5'
6780 5' -53.6 NC_001875.2 + 74376 0.69 0.802752
Target:  5'- gCGGCCgcGGCGCGUuc--AGgcGCGggUa -3'
miRNA:   3'- -GCCGG--CCGCGCGuuuuUCuuCGCuuA- -5'
6780 5' -53.6 NC_001875.2 + 76890 0.72 0.651038
Target:  5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3'
miRNA:   3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 79100 0.68 0.870619
Target:  5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3'
miRNA:   3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 79827 0.67 0.899269
Target:  5'- cCGGCaugguGGUGCcaGCAAGAAGggGCa--- -3'
miRNA:   3'- -GCCGg----CCGCG--CGUUUUUCuuCGcuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.