miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 780 0.66 0.939753
Target:  5'- aCGG-CGGCGCGCGGAAcGuucauGGCGu-- -3'
miRNA:   3'- -GCCgGCCGCGCGUUUUuCu----UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 2945 0.66 0.949017
Target:  5'- gCGcGCUGGCGCGCuugcucGGcAGCGGu- -3'
miRNA:   3'- -GC-CGGCCGCGCGuuuu--UCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 3108 0.68 0.862867
Target:  5'- gGGCgCGGCucgcgGCGCAGAccuGGGcGGCGAAg -3'
miRNA:   3'- gCCG-GCCG-----CGCGUUU---UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 5534 0.7 0.783946
Target:  5'- cCGGCCgccguugaGGCGCGCGuuAAGGugccagucacGGCGAc- -3'
miRNA:   3'- -GCCGG--------CCGCGCGUuuUUCU----------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 5539 0.66 0.923941
Target:  5'- uCGGaggaGGaCGCGCGGcaauucGAGGAGCGAAUa -3'
miRNA:   3'- -GCCgg--CC-GCGCGUUu-----UUCUUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 10632 0.68 0.870619
Target:  5'- cCGGCCGGUGCcgcccagcguGCAGuacuuGGGcGGCGGAc -3'
miRNA:   3'- -GCCGGCCGCG----------CGUUu----UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 11631 0.68 0.878141
Target:  5'- gGGuuGGCGCGCAucguuguGuucAGCGGAa -3'
miRNA:   3'- gCCggCCGCGCGUuuuu---Cu--UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 19949 0.68 0.885426
Target:  5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 20009 0.66 0.928384
Target:  5'- uGGCCGGCucGCGCAGccgucacGCGGAg -3'
miRNA:   3'- gCCGGCCG--CGCGUUuuucuu-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 31992 0.66 0.949017
Target:  5'- aCGGCCGGUuuGUGAGcGGcGGCGAc- -3'
miRNA:   3'- -GCCGGCCGcgCGUUUuUCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 32394 0.68 0.878141
Target:  5'- aGGgCGGCGaCGCAAAAGuuguGGGCGAc- -3'
miRNA:   3'- gCCgGCCGC-GCGUUUUUc---UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 32488 0.67 0.912115
Target:  5'- uGGCgGGCGCGCcc-AAGuugcGCGGAc -3'
miRNA:   3'- gCCGgCCGCGCGuuuUUCuu--CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 35792 0.67 0.912115
Target:  5'- gCGuGCCGGUGCGCAcgcgcuuGccGCGAAc -3'
miRNA:   3'- -GC-CGGCCGCGCGUuuuu---CuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 38455 0.67 0.912115
Target:  5'- aGuGCCGGCGCGCGcu-AGAauuggugcAGCGcGUg -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuUCU--------UCGCuUA- -5'
6780 5' -53.6 NC_001875.2 + 38597 0.7 0.764553
Target:  5'- gGGCCaGCuGCGCGucGAGGAGCGc-- -3'
miRNA:   3'- gCCGGcCG-CGCGUuuUUCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 39667 0.72 0.651038
Target:  5'- gGGCCGGCgGCGCGc--GGcGGCGAGc -3'
miRNA:   3'- gCCGGCCG-CGCGUuuuUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 39931 0.66 0.938771
Target:  5'- gCGGCCuGCGCGCAAuuugcgcGCGGu- -3'
miRNA:   3'- -GCCGGcCGCGCGUUuuucuu-CGCUua -5'
6780 5' -53.6 NC_001875.2 + 40829 0.66 0.944512
Target:  5'- cCGGCCGGC-CGUggGcAAGAcGGCGc-- -3'
miRNA:   3'- -GCCGGCCGcGCGuuU-UUCU-UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 41352 0.67 0.89247
Target:  5'- gGGCC-GCGCGCAGuuuGAacgcgcgcugcAGCGAAa -3'
miRNA:   3'- gCCGGcCGCGCGUUuuuCU-----------UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 44195 0.67 0.89247
Target:  5'- -cGUCGGCGCGUGAAAc--AGCGAGUu -3'
miRNA:   3'- gcCGGCCGCGCGUUUUucuUCGCUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.