miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 44195 0.67 0.89247
Target:  5'- -cGUCGGCGCGUGAAAc--AGCGAGUu -3'
miRNA:   3'- gcCGGCCGCGCGUUUUucuUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 10632 0.68 0.870619
Target:  5'- cCGGCCGGUGCcgcccagcguGCAGuacuuGGGcGGCGGAc -3'
miRNA:   3'- -GCCGGCCGCG----------CGUUu----UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 80617 0.68 0.870619
Target:  5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3'
miRNA:   3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 118320 0.68 0.870619
Target:  5'- gCGGCCGGcCGCGCGcu--GcAGGUGAu- -3'
miRNA:   3'- -GCCGGCC-GCGCGUuuuuC-UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 32394 0.68 0.878141
Target:  5'- aGGgCGGCGaCGCAAAAGuuguGGGCGAc- -3'
miRNA:   3'- gCCgGCCGC-GCGUUUUUc---UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 98899 0.68 0.878141
Target:  5'- uGGCgagCGGCGCGCAAAcuGAcGCGc-- -3'
miRNA:   3'- gCCG---GCCGCGCGUUUuuCUuCGCuua -5'
6780 5' -53.6 NC_001875.2 + 93197 0.68 0.878141
Target:  5'- cCGGCCaGCGCGCAAuacGcGGCGu-- -3'
miRNA:   3'- -GCCGGcCGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 95705 0.67 0.89247
Target:  5'- aCGGCUcgGGCGCGCuGAAAc--GCGAAg -3'
miRNA:   3'- -GCCGG--CCGCGCGuUUUUcuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 117337 0.67 0.89247
Target:  5'- aCGGCgCGGCGCGgGcGAAccGGCGGGc -3'
miRNA:   3'- -GCCG-GCCGCGCgUuUUUcuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 58897 0.68 0.854891
Target:  5'- aGGCCGcgaacGCGCGCuacGAAGccGCGGAc -3'
miRNA:   3'- gCCGGC-----CGCGCGuu-UUUCuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 131512 0.69 0.838295
Target:  5'- gCGGCgcgCGGUGCaGCGGcuGGAAGCGGc- -3'
miRNA:   3'- -GCCG---GCCGCG-CGUUuuUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 131298 0.69 0.820893
Target:  5'- -aGCUGGacgcCGCGCAAAAAGAAGCu--- -3'
miRNA:   3'- gcCGGCC----GCGCGUUUUUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 103991 0.75 0.514887
Target:  5'- uGGgCGGCGUGCAAAuGGAaAGCGAc- -3'
miRNA:   3'- gCCgGCCGCGCGUUUuUCU-UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 100266 0.73 0.587435
Target:  5'- uGGgCGGCGCGCAA--GGAAGCc--- -3'
miRNA:   3'- gCCgGCCGCGCGUUuuUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 39667 0.72 0.651038
Target:  5'- gGGCCGGCgGCGCGc--GGcGGCGAGc -3'
miRNA:   3'- gCCGGCCG-CGCGUuuuUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 49860 0.7 0.752669
Target:  5'- cCGGCCGGCGCGCcuugcc-GGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 122808 0.7 0.754661
Target:  5'- gCGGCCGGCGgcuccaaaCGCAAGGcguccGAGGUGGAc -3'
miRNA:   3'- -GCCGGCCGC--------GCGUUUUu----CUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 38597 0.7 0.764553
Target:  5'- gGGCCaGCuGCGCGucGAGGAGCGc-- -3'
miRNA:   3'- gCCGGcCG-CGCGUuuUUCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 110654 0.7 0.781072
Target:  5'- uGGCCGugccGCGCGacgacgauuuuugcCGAAAAGAAGCGGc- -3'
miRNA:   3'- gCCGGC----CGCGC--------------GUUUUUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 74376 0.69 0.802752
Target:  5'- gCGGCCgcGGCGCGUuc--AGgcGCGggUa -3'
miRNA:   3'- -GCCGG--CCGCGCGuuuuUCuuCGCuuA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.