miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 81998 1.06 0.005983
Target:  5'- cCGGCCGGCGCGCAAAAAGAAGCGAAUc -3'
miRNA:   3'- -GCCGGCCGCGCGUUUUUCUUCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 70352 0.84 0.154543
Target:  5'- cCGaGCCGGCGCGCAAAAGGGugaaggaaaacuacaAGCGggUg -3'
miRNA:   3'- -GC-CGGCCGCGCGUUUUUCU---------------UCGCuuA- -5'
6780 5' -53.6 NC_001875.2 + 122141 0.8 0.282363
Target:  5'- gCGGCCGGCGCGCAcGAc--GGCGAGc -3'
miRNA:   3'- -GCCGGCCGCGCGUuUUucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 62399 0.76 0.42757
Target:  5'- uGGCCGGCGCGCAAAcgccGGCGu-- -3'
miRNA:   3'- gCCGGCCGCGCGUUUuucuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 103991 0.75 0.514887
Target:  5'- uGGgCGGCGUGCAAAuGGAaAGCGAc- -3'
miRNA:   3'- gCCgGCCGCGCGUUUuUCU-UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 60208 0.74 0.576909
Target:  5'- uGcGCCGGCG-GCAGAuuGAAGCGGc- -3'
miRNA:   3'- gC-CGGCCGCgCGUUUuuCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 100266 0.73 0.587435
Target:  5'- uGGgCGGCGCGCAA--GGAAGCc--- -3'
miRNA:   3'- gCCgGCCGCGCGUUuuUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 76890 0.72 0.651038
Target:  5'- cCGGCaaacGCGCGCGcAAAGggGCGGc- -3'
miRNA:   3'- -GCCGgc--CGCGCGUuUUUCuuCGCUua -5'
6780 5' -53.6 NC_001875.2 + 39667 0.72 0.651038
Target:  5'- gGGCCGGCgGCGCGc--GGcGGCGAGc -3'
miRNA:   3'- gCCGGCCG-CGCGUuuuUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 102906 0.72 0.682739
Target:  5'- gCGGCCGGC-CGUu----GAAGCGGAg -3'
miRNA:   3'- -GCCGGCCGcGCGuuuuuCUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 61736 0.71 0.703664
Target:  5'- uCGGCCGGCugcgGCGCAAAGGGGucaaacguuGGCa--- -3'
miRNA:   3'- -GCCGGCCG----CGCGUUUUUCU---------UCGcuua -5'
6780 5' -53.6 NC_001875.2 + 109116 0.71 0.743647
Target:  5'- uGGCCGGCGCaCAAGuAGGccacaguGGCGAc- -3'
miRNA:   3'- gCCGGCCGCGcGUUUuUCU-------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 49860 0.7 0.752669
Target:  5'- cCGGCCGGCGCGCcuugcc-GGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGCGuuuuucuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 90038 0.7 0.754661
Target:  5'- gGcGCCGGCGCGCGugcc--GGCGGAa -3'
miRNA:   3'- gC-CGGCCGCGCGUuuuucuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 122808 0.7 0.754661
Target:  5'- gCGGCCGGCGgcuccaaaCGCAAGGcguccGAGGUGGAc -3'
miRNA:   3'- -GCCGGCCGC--------GCGUUUUu----CUUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 46180 0.7 0.761598
Target:  5'- aGGCCGGCGCGCccacAAuuaagcuaaaucgcGAGGAcacGGUGAAc -3'
miRNA:   3'- gCCGGCCGCGCG----UU--------------UUUCU---UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 38597 0.7 0.764553
Target:  5'- gGGCCaGCuGCGCGucGAGGAGCGc-- -3'
miRNA:   3'- gCCGGcCG-CGCGUuuUUCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 110654 0.7 0.781072
Target:  5'- uGGCCGugccGCGCGacgacgauuuuugcCGAAAAGAAGCGGc- -3'
miRNA:   3'- gCCGGC----CGCGC--------------GUUUUUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 5534 0.7 0.783946
Target:  5'- cCGGCCgccguugaGGCGCGCGuuAAGGugccagucacGGCGAc- -3'
miRNA:   3'- -GCCGG--------CCGCGCGUuuUUCU----------UCGCUua -5'
6780 5' -53.6 NC_001875.2 + 74376 0.69 0.802752
Target:  5'- gCGGCCgcGGCGCGUuc--AGgcGCGggUa -3'
miRNA:   3'- -GCCGG--CCGCGCGuuuuUCuuCGCuuA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.