miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 5' -51.7 NC_001875.2 + 1042 0.66 0.982246
Target:  5'- cCGAGGC--GCACAGcGUUGGGCG-CAa -3'
miRNA:   3'- -GCUUUGcaCGUGUCuCAGCCUGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 3137 0.76 0.628362
Target:  5'- gCGAAGCccgcUGCGCGGAcgcggcGUCGGGCGGCGa -3'
miRNA:   3'- -GCUUUGc---ACGUGUCU------CAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 7099 0.74 0.712029
Target:  5'- ---uACGUGCGCGGc-UCGGACGGCGg -3'
miRNA:   3'- gcuuUGCACGUGUCucAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 9803 0.66 0.986004
Target:  5'- ---cGCGUGCACAGuaacGUUGGGCcgGACc -3'
miRNA:   3'- gcuuUGCACGUGUCu---CAGCCUG--CUGu -5'
6781 5' -51.7 NC_001875.2 + 12435 0.69 0.942621
Target:  5'- cCGuuGCGUGCGCGccG-CGGugGACGc -3'
miRNA:   3'- -GCuuUGCACGUGUcuCaGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 16211 0.67 0.977776
Target:  5'- gCGGccCGUGUuu-GAGUCGGGCGAg- -3'
miRNA:   3'- -GCUuuGCACGuguCUCAGCCUGCUgu -5'
6781 5' -51.7 NC_001875.2 + 19348 0.69 0.927387
Target:  5'- gGcGugGUGCGCGGAgcGUUGGcCGACGu -3'
miRNA:   3'- gCuUugCACGUGUCU--CAGCCuGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 19990 0.68 0.947196
Target:  5'- cCGAcAACGUGCACgaGGAGUCGuuCGcCAa -3'
miRNA:   3'- -GCU-UUGCACGUG--UCUCAGCcuGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 21939 0.73 0.772012
Target:  5'- gCGggGCGUuaaacguucgcgGCGCGGGGaUGGGCGGCGc -3'
miRNA:   3'- -GCuuUGCA------------CGUGUCUCaGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 28654 0.7 0.896946
Target:  5'- uGGAACGUGUggaACGGcGgcgUGGGCGACAu -3'
miRNA:   3'- gCUUUGCACG---UGUCuCa--GCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 28947 0.7 0.890112
Target:  5'- uGggGCGUGUACGGccgcGGcuuucCGGugGACAa -3'
miRNA:   3'- gCuuUGCACGUGUC----UCa----GCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 31151 0.67 0.966436
Target:  5'- aCGcgcCGcGCGCGGAGUCGGACa--- -3'
miRNA:   3'- -GCuuuGCaCGUGUCUCAGCCUGcugu -5'
6781 5' -51.7 NC_001875.2 + 33888 0.66 0.984209
Target:  5'- cCGAAAUGacuaGCGCcucGGGGUCGGuuuggugcaGCGACAc -3'
miRNA:   3'- -GCUUUGCa---CGUG---UCUCAGCC---------UGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 48962 0.69 0.921803
Target:  5'- uCGuuuGACaUGCacGCAGAGUCGGGCGcCGa -3'
miRNA:   3'- -GCu--UUGcACG--UGUCUCAGCCUGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 50386 0.66 0.980104
Target:  5'- gCGGAccaGCGUGUACuuuuugCGGACGGCGc -3'
miRNA:   3'- -GCUU---UGCACGUGucuca-GCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 59863 0.66 0.982246
Target:  5'- gCGAcGCGUGCAagcuGAGgacgagcuUCGcGGCGACAg -3'
miRNA:   3'- -GCUuUGCACGUgu--CUC--------AGC-CUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 64907 0.69 0.932718
Target:  5'- -cAAGCGcGCGCAGAG-CGacGACGACAu -3'
miRNA:   3'- gcUUUGCaCGUGUCUCaGC--CUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 65436 0.66 0.987637
Target:  5'- --cGGCGUGCACcgcuGGcGGUCGGugGcCAg -3'
miRNA:   3'- gcuUUGCACGUG----UC-UCAGCCugCuGU- -5'
6781 5' -51.7 NC_001875.2 + 67333 0.7 0.915965
Target:  5'- aCGAAAgcagcaGCGacgaGGAGUCGGGCGGCAa -3'
miRNA:   3'- -GCUUUgca---CGUg---UCUCAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 68010 0.71 0.852436
Target:  5'- -uGGACG-GCuACAGGuuGUCGGACGACGa -3'
miRNA:   3'- gcUUUGCaCG-UGUCU--CAGCCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.