miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6781 5' -51.7 NC_001875.2 + 90441 0.75 0.649442
Target:  5'- aGAcGCGcGCGCAGAggcGUCGGugGGCGg -3'
miRNA:   3'- gCUuUGCaCGUGUCU---CAGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 98679 0.67 0.97873
Target:  5'- gGAGACGUGCauucGCAGAcacgccaauggacagGUgUGGACGGCc -3'
miRNA:   3'- gCUUUGCACG----UGUCU---------------CA-GCCUGCUGu -5'
6781 5' -51.7 NC_001875.2 + 50386 0.66 0.980104
Target:  5'- gCGGAccaGCGUGUACuuuuugCGGACGGCGc -3'
miRNA:   3'- -GCUU---UGCACGUGucuca-GCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 1042 0.66 0.982246
Target:  5'- cCGAGGC--GCACAGcGUUGGGCG-CAa -3'
miRNA:   3'- -GCUUUGcaCGUGUCuCAGCCUGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 113836 0.66 0.984209
Target:  5'- gGAAcaGCG-GguCGGGGUCGGGCcGCAc -3'
miRNA:   3'- gCUU--UGCaCguGUCUCAGCCUGcUGU- -5'
6781 5' -51.7 NC_001875.2 + 33888 0.66 0.984209
Target:  5'- cCGAAAUGacuaGCGCcucGGGGUCGGuuuggugcaGCGACAc -3'
miRNA:   3'- -GCUUUGCa---CGUG---UCUCAGCC---------UGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 110160 0.66 0.984209
Target:  5'- ---cGCGUcGCGCuc-GUCGGGCGGCGu -3'
miRNA:   3'- gcuuUGCA-CGUGucuCAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 105578 0.66 0.987637
Target:  5'- aGgcGCGUGUACAucuuGG-CGGugGACAc -3'
miRNA:   3'- gCuuUGCACGUGUc---UCaGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 65436 0.66 0.987637
Target:  5'- --cGGCGUGCACcgcuGGcGGUCGGugGcCAg -3'
miRNA:   3'- gcuUUGCACGUG----UC-UCAGCCugCuGU- -5'
6781 5' -51.7 NC_001875.2 + 16211 0.67 0.977776
Target:  5'- gCGGccCGUGUuu-GAGUCGGGCGAg- -3'
miRNA:   3'- -GCUuuGCACGuguCUCAGCCUGCUgu -5'
6781 5' -51.7 NC_001875.2 + 128756 0.67 0.972527
Target:  5'- cCGgcGCGUGCACGccGU-GGGCGACc -3'
miRNA:   3'- -GCuuUGCACGUGUcuCAgCCUGCUGu -5'
6781 5' -51.7 NC_001875.2 + 69729 0.73 0.791054
Target:  5'- --uAACGUuuGCACGGAaUCGGGCGGCGa -3'
miRNA:   3'- gcuUUGCA--CGUGUCUcAGCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 86652 0.71 0.860421
Target:  5'- cCGAAucgaGCGUGguCAGGG-CGGcCGACAa -3'
miRNA:   3'- -GCUU----UGCACguGUCUCaGCCuGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 19348 0.69 0.927387
Target:  5'- gGcGugGUGCGCGGAgcGUUGGcCGACGu -3'
miRNA:   3'- gCuUugCACGUGUCU--CAGCCuGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 12435 0.69 0.942621
Target:  5'- cCGuuGCGUGCGCGccG-CGGugGACGc -3'
miRNA:   3'- -GCuuUGCACGUGUcuCaGCCugCUGU- -5'
6781 5' -51.7 NC_001875.2 + 19990 0.68 0.947196
Target:  5'- cCGAcAACGUGCACgaGGAGUCGuuCGcCAa -3'
miRNA:   3'- -GCU-UUGCACGUG--UCUCAGCcuGCuGU- -5'
6781 5' -51.7 NC_001875.2 + 98499 0.67 0.96959
Target:  5'- aGAGACGaGUuuGGuGUgGGGCGACAg -3'
miRNA:   3'- gCUUUGCaCGugUCuCAgCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 81888 0.67 0.96959
Target:  5'- --cGGCGUGCACGGucGUCGGcagcuUGACGc -3'
miRNA:   3'- gcuUUGCACGUGUCu-CAGCCu----GCUGU- -5'
6781 5' -51.7 NC_001875.2 + 96980 0.67 0.971668
Target:  5'- uGGAcguCGUGCGCAaguugcguugcgacGGGUgUGGGCGACAa -3'
miRNA:   3'- gCUUu--GCACGUGU--------------CUCA-GCCUGCUGU- -5'
6781 5' -51.7 NC_001875.2 + 9803 0.66 0.986004
Target:  5'- ---cGCGUGCACAGuaacGUUGGGCcgGACc -3'
miRNA:   3'- gcuuUGCACGUGUCu---CAGCCUG--CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.