miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6782 3' -51.4 NC_001875.2 + 80917 1.1 0.004844
Target:  5'- cGCCUGAAAAACCACAGCCUCGGCAUAg -3'
miRNA:   3'- -CGGACUUUUUGGUGUCGGAGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 2677 0.8 0.371566
Target:  5'- cGCCUGggGcAACUGCGgcGCCUCGGCAg- -3'
miRNA:   3'- -CGGACuuU-UUGGUGU--CGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 108168 0.76 0.560491
Target:  5'- aGCCUGGucguGcacacggaccgcgauGACCugGGCCUCGGCGa- -3'
miRNA:   3'- -CGGACUu---U---------------UUGGugUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 75942 0.76 0.56688
Target:  5'- gGCCgcGAAAagcuGACCGCGGCCaUCGGCAc- -3'
miRNA:   3'- -CGGa-CUUU----UUGGUGUCGG-AGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 26187 0.74 0.652055
Target:  5'- uGCUUGAAAGGgCACAGCCcauguacauguacUCGGCGa- -3'
miRNA:   3'- -CGGACUUUUUgGUGUCGG-------------AGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 12182 0.74 0.696106
Target:  5'- -gCUGAGAAugCGCAGCUUgGGCGc- -3'
miRNA:   3'- cgGACUUUUugGUGUCGGAgCCGUau -5'
6782 3' -51.4 NC_001875.2 + 65739 0.73 0.717274
Target:  5'- cGCCgccc--GCCGCgcgGGCCUCGGCGUAu -3'
miRNA:   3'- -CGGacuuuuUGGUG---UCGGAGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 122656 0.71 0.816487
Target:  5'- aGCCuuaugaaccuguUGGAAGACCGCAGCaaaaagUUGGCGUGc -3'
miRNA:   3'- -CGG------------ACUUUUUGGUGUCGg-----AGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 11092 0.71 0.825547
Target:  5'- cCCUGGAcacGGCCGCcGUCUCGGCGc- -3'
miRNA:   3'- cGGACUUu--UUGGUGuCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 65929 0.71 0.851511
Target:  5'- cGCCUGAucAAAgCGCAGCCgCGGUu-- -3'
miRNA:   3'- -CGGACUu-UUUgGUGUCGGaGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 57468 0.7 0.875476
Target:  5'- cGCCUGAAcgcGCCGCGGCCgc-GCAc- -3'
miRNA:   3'- -CGGACUUuu-UGGUGUCGGagcCGUau -5'
6782 3' -51.4 NC_001875.2 + 120416 0.7 0.890249
Target:  5'- aGgCUGGAAGugCGCAGUCgcaCGGCGg- -3'
miRNA:   3'- -CgGACUUUUugGUGUCGGa--GCCGUau -5'
6782 3' -51.4 NC_001875.2 + 59034 0.69 0.897257
Target:  5'- cGCCUGAGGGgcgaaauuGCCGCGuugcaaaacGCgUCGGCAa- -3'
miRNA:   3'- -CGGACUUUU--------UGGUGU---------CGgAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 86310 0.69 0.897257
Target:  5'- uCUUGAAGGGCauuaGCAGCUUUGGCGc- -3'
miRNA:   3'- cGGACUUUUUGg---UGUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 92735 0.69 0.904006
Target:  5'- cGCCaUGGAgcgcgGAACUGCAGCgUUGGCAc- -3'
miRNA:   3'- -CGG-ACUU-----UUUGGUGUCGgAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 46481 0.68 0.928366
Target:  5'- uGCCaacgcGAAcgccGCCACGGCgUCGGCGUu -3'
miRNA:   3'- -CGGa----CUUuu--UGGUGUCGgAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 102322 0.68 0.943836
Target:  5'- cGCagacaUGAAAAacaaaGCCGCGcGUCUCGGCAc- -3'
miRNA:   3'- -CGg----ACUUUU-----UGGUGU-CGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 84378 0.67 0.952406
Target:  5'- gGCCUGccggggcggcgucGGuAGCCGgAGCUUCGGCGg- -3'
miRNA:   3'- -CGGAC-------------UUuUUGGUgUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 54000 0.67 0.952831
Target:  5'- -gCUGGuc-GCgCACGGCCUUGGCGg- -3'
miRNA:   3'- cgGACUuuuUG-GUGUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 33532 0.67 0.956943
Target:  5'- uGCCgggcGAAAccACCACGGCgUCGGUg-- -3'
miRNA:   3'- -CGGa---CUUUu-UGGUGUCGgAGCCGuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.