miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6782 3' -51.4 NC_001875.2 + 2677 0.8 0.371566
Target:  5'- cGCCUGggGcAACUGCGgcGCCUCGGCAg- -3'
miRNA:   3'- -CGGACuuU-UUGGUGU--CGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 11092 0.71 0.825547
Target:  5'- cCCUGGAcacGGCCGCcGUCUCGGCGc- -3'
miRNA:   3'- cGGACUUu--UUGGUGuCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 11592 0.65 0.9828
Target:  5'- cGCCuacgUGAGAAccgucguuaccacuACCACAGUUUCGGaCAg- -3'
miRNA:   3'- -CGG----ACUUUU--------------UGGUGUCGGAGCC-GUau -5'
6782 3' -51.4 NC_001875.2 + 12182 0.74 0.696106
Target:  5'- -gCUGAGAAugCGCAGCUUgGGCGc- -3'
miRNA:   3'- cgGACUUUUugGUGUCGGAgCCGUau -5'
6782 3' -51.4 NC_001875.2 + 26187 0.74 0.652055
Target:  5'- uGCUUGAAAGGgCACAGCCcauguacauguacUCGGCGa- -3'
miRNA:   3'- -CGGACUUUUUgGUGUCGG-------------AGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 29151 0.67 0.964417
Target:  5'- cCCUGGccaguguaaaAGAAUC-CGGCCUCGGCc-- -3'
miRNA:   3'- cGGACU----------UUUUGGuGUCGGAGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 33532 0.67 0.956943
Target:  5'- uGCCgggcGAAAccACCACGGCgUCGGUg-- -3'
miRNA:   3'- -CGGa---CUUUu-UGGUGUCGgAGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 36275 0.66 0.981315
Target:  5'- cGCCUGcacaacGGAGcgccaaugcGCCGCAGCCaccucaaGGCAUAu -3'
miRNA:   3'- -CGGAC------UUUU---------UGGUGUCGGag-----CCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 37585 0.67 0.960803
Target:  5'- cGCCggcgcGAGcGCCGCGGCCggccgcacggCGGCGUGc -3'
miRNA:   3'- -CGGac---UUUuUGGUGUCGGa---------GCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 39023 0.66 0.970931
Target:  5'- -aCUGAugcGACCGCGGCg-CGGCAc- -3'
miRNA:   3'- cgGACUuu-UUGGUGUCGgaGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 46481 0.68 0.928366
Target:  5'- uGCCaacgcGAAcgccGCCACGGCgUCGGCGUu -3'
miRNA:   3'- -CGGa----CUUuu--UGGUGUCGgAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 54000 0.67 0.952831
Target:  5'- -gCUGGuc-GCgCACGGCCUUGGCGg- -3'
miRNA:   3'- cgGACUuuuUG-GUGUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 57468 0.7 0.875476
Target:  5'- cGCCUGAAcgcGCCGCGGCCgc-GCAc- -3'
miRNA:   3'- -CGGACUUuu-UGGUGUCGGagcCGUau -5'
6782 3' -51.4 NC_001875.2 + 59034 0.69 0.897257
Target:  5'- cGCCUGAGGGgcgaaauuGCCGCGuugcaaaacGCgUCGGCAa- -3'
miRNA:   3'- -CGGACUUUU--------UGGUGU---------CGgAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 60464 0.67 0.966803
Target:  5'- uGCUUGAGGAGCCccaGCaaauucauugugcuAGCgUCGGCGUu -3'
miRNA:   3'- -CGGACUUUUUGG---UG--------------UCGgAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 65739 0.73 0.717274
Target:  5'- cGCCgccc--GCCGCgcgGGCCUCGGCGUAu -3'
miRNA:   3'- -CGGacuuuuUGGUG---UCGGAGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 65929 0.71 0.851511
Target:  5'- cGCCUGAucAAAgCGCAGCCgCGGUu-- -3'
miRNA:   3'- -CGGACUu-UUUgGUGUCGGaGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 74041 0.66 0.970931
Target:  5'- uGCCgcgcuAAAAACCGC-GCugCUCGGCGUGg -3'
miRNA:   3'- -CGGac---UUUUUGGUGuCG--GAGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 75942 0.76 0.56688
Target:  5'- gGCCgcGAAAagcuGACCGCGGCCaUCGGCAc- -3'
miRNA:   3'- -CGGa-CUUU----UUGGUGUCGG-AGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 76429 0.66 0.973846
Target:  5'- aGCCguUGAccGAUUACAGCUUCaGCAUGa -3'
miRNA:   3'- -CGG--ACUuuUUGGUGUCGGAGcCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.