miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6782 5' -53.5 NC_001875.2 + 2274 0.69 0.879721
Target:  5'- gGGCCauguugaCGUCGuGAUgcgcgcgcgcCGUGGCCGCGc -3'
miRNA:   3'- -CCGG-------GCAGUuCUAaaa-------GCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 6920 0.66 0.961844
Target:  5'- cGCUCGgcCGAGGg---CGUGGaCCGCGc -3'
miRNA:   3'- cCGGGCa-GUUCUaaaaGCACC-GGCGC- -5'
6782 5' -53.5 NC_001875.2 + 11809 0.74 0.640534
Target:  5'- cGGCCgCGUCGGug--UUUGUGGUCGCGc -3'
miRNA:   3'- -CCGG-GCAGUUcuaaAAGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 20906 0.66 0.954329
Target:  5'- aGCCCGUCGcauuGUUcgUGUGGgCGCGc -3'
miRNA:   3'- cCGGGCAGUuc--UAAaaGCACCgGCGC- -5'
6782 5' -53.5 NC_001875.2 + 22955 0.66 0.95022
Target:  5'- aGGCgCGUCAAGAUugcgucUUUgGUGGUuuccaGCGc -3'
miRNA:   3'- -CCGgGCAGUUCUA------AAAgCACCGg----CGC- -5'
6782 5' -53.5 NC_001875.2 + 25920 0.68 0.908564
Target:  5'- cGGCCaaugccCGAGuUUUUCGUGGUgGCGc -3'
miRNA:   3'- -CCGGgca---GUUCuAAAAGCACCGgCGC- -5'
6782 5' -53.5 NC_001875.2 + 26475 0.67 0.941281
Target:  5'- cGGCCUcgcgGUCGuaGUUUUCGcaauaggcGGCCGCGu -3'
miRNA:   3'- -CCGGG----CAGUucUAAAAGCa-------CCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 28901 0.71 0.777681
Target:  5'- aGCCCGgccgcccccacaaCAAGAc---CGUGGCCGCGu -3'
miRNA:   3'- cCGGGCa------------GUUCUaaaaGCACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 30907 0.68 0.901605
Target:  5'- gGGCCCGUUuugcGcgUUUUGcaguauaggucuuUGGCCGCa -3'
miRNA:   3'- -CCGGGCAGuu--CuaAAAGC-------------ACCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 33873 0.72 0.702564
Target:  5'- cGGCCgG-CAgaacGGcgUUUCgGUGGCCGCGu -3'
miRNA:   3'- -CCGGgCaGU----UCuaAAAG-CACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 35050 0.73 0.65094
Target:  5'- cGGCCCGUCGcaggAGGUgcccgugcuggUUUGcGGCCGCa -3'
miRNA:   3'- -CCGGGCAGU----UCUAa----------AAGCaCCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 42528 0.67 0.931364
Target:  5'- aGGCCCGUCGugccgcUCGacaucuccacggUGGUCGCGc -3'
miRNA:   3'- -CCGGGCAGUucuaaaAGC------------ACCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 46301 0.67 0.943147
Target:  5'- cGCCCGUCuAGcaugaaccgcgugcuGAUca-CGUGGCCGCc -3'
miRNA:   3'- cCGGGCAG-UU---------------CUAaaaGCACCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 50002 0.66 0.96526
Target:  5'- cGCuuGUCGcGGUUggggcgcgCGUGGUCGCc -3'
miRNA:   3'- cCGggCAGUuCUAAaa------GCACCGGCGc -5'
6782 5' -53.5 NC_001875.2 + 50858 0.69 0.867135
Target:  5'- gGGCCCGUCGAcuugUUUGUGuucaacCCGCGa -3'
miRNA:   3'- -CCGGGCAGUUcuaaAAGCACc-----GGCGC- -5'
6782 5' -53.5 NC_001875.2 + 50906 0.66 0.954329
Target:  5'- gGGCCCGUCGuAGucuaugcCGaGGCUGUGg -3'
miRNA:   3'- -CCGGGCAGU-UCuaaaa--GCaCCGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 50933 0.69 0.874617
Target:  5'- cGCCCGUCAAGuugUUCGUGaaCgGCa -3'
miRNA:   3'- cCGGGCAGUUCuaaAAGCACc-GgCGc -5'
6782 5' -53.5 NC_001875.2 + 53866 0.68 0.920457
Target:  5'- uGGCaCCGUCGGccuGUUggUCGUGcggccGCCGCGg -3'
miRNA:   3'- -CCG-GGCAGUUc--UAAa-AGCAC-----CGGCGC- -5'
6782 5' -53.5 NC_001875.2 + 72819 0.67 0.936445
Target:  5'- cGCCCcUCAGGcgcucGUUUUCaGUGGCCaGCu -3'
miRNA:   3'- cCGGGcAGUUC-----UAAAAG-CACCGG-CGc -5'
6782 5' -53.5 NC_001875.2 + 73725 0.69 0.874617
Target:  5'- gGGUUgGUCGGGAg----GUGGCUGCGg -3'
miRNA:   3'- -CCGGgCAGUUCUaaaagCACCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.