Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6782 | 5' | -53.5 | NC_001875.2 | + | 35050 | 0.73 | 0.65094 |
Target: 5'- cGGCCCGUCGcaggAGGUgcccgugcuggUUUGcGGCCGCa -3' miRNA: 3'- -CCGGGCAGU----UCUAa----------AAGCaCCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 50002 | 0.66 | 0.96526 |
Target: 5'- cGCuuGUCGcGGUUggggcgcgCGUGGUCGCc -3' miRNA: 3'- cCGggCAGUuCUAAaa------GCACCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 50906 | 0.66 | 0.954329 |
Target: 5'- gGGCCCGUCGuAGucuaugcCGaGGCUGUGg -3' miRNA: 3'- -CCGGGCAGU-UCuaaaa--GCaCCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 103232 | 0.66 | 0.95022 |
Target: 5'- cGGCCuugCGcUCAaccAGGUUUUCGUaGGCgGUGg -3' miRNA: 3'- -CCGG---GC-AGU---UCUAAAAGCA-CCGgCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 46301 | 0.67 | 0.943147 |
Target: 5'- cGCCCGUCuAGcaugaaccgcgugcuGAUca-CGUGGCCGCc -3' miRNA: 3'- cCGGGCAG-UU---------------CUAaaaGCACCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 26475 | 0.67 | 0.941281 |
Target: 5'- cGGCCUcgcgGUCGuaGUUUUCGcaauaggcGGCCGCGu -3' miRNA: 3'- -CCGGG----CAGUucUAAAAGCa-------CCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 42528 | 0.67 | 0.931364 |
Target: 5'- aGGCCCGUCGugccgcUCGacaucuccacggUGGUCGCGc -3' miRNA: 3'- -CCGGGCAGUucuaaaAGC------------ACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 53866 | 0.68 | 0.920457 |
Target: 5'- uGGCaCCGUCGGccuGUUggUCGUGcggccGCCGCGg -3' miRNA: 3'- -CCG-GGCAGUUc--UAAa-AGCAC-----CGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 120724 | 0.68 | 0.908564 |
Target: 5'- aGCCgcgaGUUu-GAUUUgagCGUGGCCGCa -3' miRNA: 3'- cCGGg---CAGuuCUAAAa--GCACCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 117365 | 0.68 | 0.908564 |
Target: 5'- cGGCuggCCGUCGGGGagg-CGccgagcuugcUGGCCGCGg -3' miRNA: 3'- -CCG---GGCAGUUCUaaaaGC----------ACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 25920 | 0.68 | 0.908564 |
Target: 5'- cGGCCaaugccCGAGuUUUUCGUGGUgGCGc -3' miRNA: 3'- -CCGGgca---GUUCuAAAAGCACCGgCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 30907 | 0.68 | 0.901605 |
Target: 5'- gGGCCCGUUuugcGcgUUUUGcaguauaggucuuUGGCCGCa -3' miRNA: 3'- -CCGGGCAGuu--CuaAAAGC-------------ACCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 87851 | 0.71 | 0.799984 |
Target: 5'- cGCCCGUCGGGcugucCGUGGCgGuCGg -3' miRNA: 3'- cCGGGCAGUUCuaaaaGCACCGgC-GC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 130925 | 0.71 | 0.789866 |
Target: 5'- cGGCCCugcagucGUUAAGccggUUCGUGGCCGa- -3' miRNA: 3'- -CCGGG-------CAGUUCuaa-AAGCACCGGCgc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 28901 | 0.71 | 0.777681 |
Target: 5'- aGCCCGgccgcccccacaaCAAGAc---CGUGGCCGCGu -3' miRNA: 3'- cCGGGCa------------GUUCUaaaaGCACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 102368 | 0.72 | 0.711728 |
Target: 5'- uGGCCCGUCcAG-UUUUUGgagccgagccgcaUGGCCGCc -3' miRNA: 3'- -CCGGGCAGuUCuAAAAGC-------------ACCGGCGc -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 33873 | 0.72 | 0.702564 |
Target: 5'- cGGCCgG-CAgaacGGcgUUUCgGUGGCCGCGu -3' miRNA: 3'- -CCGGgCaGU----UCuaAAAG-CACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 11809 | 0.74 | 0.640534 |
Target: 5'- cGGCCgCGUCGGug--UUUGUGGUCGCGc -3' miRNA: 3'- -CCGG-GCAGUUcuaaAAGCACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 130403 | 0.77 | 0.449807 |
Target: 5'- uGCCgCGgaaGAGAggUUUGUGGCCGCGg -3' miRNA: 3'- cCGG-GCag-UUCUaaAAGCACCGGCGC- -5' |
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6782 | 5' | -53.5 | NC_001875.2 | + | 125477 | 0.66 | 0.961844 |
Target: 5'- uGCCCGaCGAcGAca-UCGUGGCCGa- -3' miRNA: 3'- cCGGGCaGUU-CUaaaAGCACCGGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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