miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6783 5' -49.9 NC_001875.2 + 79550 1.1 0.007149
Target:  5'- gCGCAAAGGCCAGCGGCAUUGUUUUCAa -3'
miRNA:   3'- -GCGUUUCCGGUCGCCGUAACAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 56449 0.74 0.742844
Target:  5'- aCGguGAGGCCGGUGGCGggguccgcgcgcgUGUUggUCAg -3'
miRNA:   3'- -GCguUUCCGGUCGCCGUa------------ACAAa-AGU- -5'
6783 5' -49.9 NC_001875.2 + 98650 0.72 0.867562
Target:  5'- gGCGAGGGCC-GCuGCAUUGUg--CAc -3'
miRNA:   3'- gCGUUUCCGGuCGcCGUAACAaaaGU- -5'
6783 5' -49.9 NC_001875.2 + 121449 0.72 0.875389
Target:  5'- cCGCGccacGGCgCGGCGGCGUUcaaaGUUUUCGg -3'
miRNA:   3'- -GCGUuu--CCG-GUCGCCGUAA----CAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 38310 0.71 0.882969
Target:  5'- aGCGccgacAAGGCCGGCGGCAUg------- -3'
miRNA:   3'- gCGU-----UUCCGGUCGCCGUAacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 75702 0.71 0.890296
Target:  5'- gGCGAGGGCaaaGGUGGCuUUG-UUUCGa -3'
miRNA:   3'- gCGUUUCCGg--UCGCCGuAACaAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 39168 0.71 0.890296
Target:  5'- cCGCGAggcGGGCCGGCGGUugcgUGgcgUUUAc -3'
miRNA:   3'- -GCGUU---UCCGGUCGCCGua--ACaa-AAGU- -5'
6783 5' -49.9 NC_001875.2 + 124769 0.71 0.890296
Target:  5'- gCGCAcAGGCCGGUGGCGUc------- -3'
miRNA:   3'- -GCGUuUCCGGUCGCCGUAacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 39657 0.7 0.916978
Target:  5'- gCGCGAguuuGGGCCGGCGGCGc-------- -3'
miRNA:   3'- -GCGUU----UCCGGUCGCCGUaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 26467 0.7 0.928702
Target:  5'- gCGCAAAacGGCCucGCGGuCGUaGUUUUCGc -3'
miRNA:   3'- -GCGUUU--CCGGu-CGCC-GUAaCAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 36341 0.7 0.928702
Target:  5'- gCGCGuguacgcGGCCGGCGGCGacuUUGUcgUCu -3'
miRNA:   3'- -GCGUuu-----CCGGUCGCCGU---AACAaaAGu -5'
6783 5' -49.9 NC_001875.2 + 131746 0.7 0.934157
Target:  5'- uGCAuuGGGCCGGCGGCGg-------- -3'
miRNA:   3'- gCGUu-UCCGGUCGCCGUaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 68929 0.7 0.934157
Target:  5'- uGCGAGGGCCGGCcggacGGguUUGUg---- -3'
miRNA:   3'- gCGUUUCCGGUCG-----CCguAACAaaagu -5'
6783 5' -49.9 NC_001875.2 + 107848 0.7 0.939339
Target:  5'- uCGCGggcGAGGCCAGCGGCc--------- -3'
miRNA:   3'- -GCGU---UUCCGGUCGCCGuaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 101791 0.69 0.944252
Target:  5'- uGCAAAGGCCGGCaagcaauuggccGGCGUUuacggUCGa -3'
miRNA:   3'- gCGUUUCCGGUCG------------CCGUAAcaaa-AGU- -5'
6783 5' -49.9 NC_001875.2 + 117881 0.69 0.948897
Target:  5'- aGCGuuGGCCAGCuuaGGCuGUUGUUUg-- -3'
miRNA:   3'- gCGUuuCCGGUCG---CCG-UAACAAAagu -5'
6783 5' -49.9 NC_001875.2 + 6260 0.69 0.954956
Target:  5'- aCGCAaacGAGGCC-GUGGCAacguuugcuuuugauUUGUUUUUg -3'
miRNA:   3'- -GCGU---UUCCGGuCGCCGU---------------AACAAAAGu -5'
6783 5' -49.9 NC_001875.2 + 124543 0.68 0.97429
Target:  5'- gGCGAgucgGGGUCGGCGGCGggGUc---- -3'
miRNA:   3'- gCGUU----UCCGGUCGCCGUaaCAaaagu -5'
6783 5' -49.9 NC_001875.2 + 113618 0.68 0.976976
Target:  5'- gCGCAccgaacAGGUCAGCGGCgAUUGgg--CAa -3'
miRNA:   3'- -GCGUu-----UCCGGUCGCCG-UAACaaaaGU- -5'
6783 5' -49.9 NC_001875.2 + 92623 0.67 0.979449
Target:  5'- gCGCGAGcGGCUuGCGcGCGUUGUUg--- -3'
miRNA:   3'- -GCGUUU-CCGGuCGC-CGUAACAAaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.