Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6783 | 5' | -49.9 | NC_001875.2 | + | 56449 | 0.74 | 0.742844 |
Target: 5'- aCGguGAGGCCGGUGGCGggguccgcgcgcgUGUUggUCAg -3' miRNA: 3'- -GCguUUCCGGUCGCCGUa------------ACAAa-AGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 18621 | 0.66 | 0.988964 |
Target: 5'- aGCAAAGGCgCAGCucGGU--UGUUgugUCGu -3' miRNA: 3'- gCGUUUCCG-GUCG--CCGuaACAAa--AGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 63447 | 0.66 | 0.988964 |
Target: 5'- gGCGucggcGGCCAGCcgcgaGGCGUUGgUUUCc -3' miRNA: 3'- gCGUuu---CCGGUCG-----CCGUAACaAAAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 109994 | 0.67 | 0.987408 |
Target: 5'- aCGCGc-GGUCGGUGGCGUUGa----- -3' miRNA: 3'- -GCGUuuCCGGUCGCCGUAACaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 551 | 0.67 | 0.985689 |
Target: 5'- uGUGGAuguaGCCGGUGGCGUUGUgcaagucgUUCAa -3' miRNA: 3'- gCGUUUc---CGGUCGCCGUAACAa-------AAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 92623 | 0.67 | 0.979449 |
Target: 5'- gCGCGAGcGGCUuGCGcGCGUUGUUg--- -3' miRNA: 3'- -GCGUUU-CCGGuCGC-CGUAACAAaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 124543 | 0.68 | 0.97429 |
Target: 5'- gGCGAgucgGGGUCGGCGGCGggGUc---- -3' miRNA: 3'- gCGUU----UCCGGUCGCCGUaaCAaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 68929 | 0.7 | 0.934157 |
Target: 5'- uGCGAGGGCCGGCcggacGGguUUGUg---- -3' miRNA: 3'- gCGUUUCCGGUCG-----CCguAACAaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 26467 | 0.7 | 0.928702 |
Target: 5'- gCGCAAAacGGCCucGCGGuCGUaGUUUUCGc -3' miRNA: 3'- -GCGUUU--CCGGu-CGCC-GUAaCAAAAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 39657 | 0.7 | 0.916978 |
Target: 5'- gCGCGAguuuGGGCCGGCGGCGc-------- -3' miRNA: 3'- -GCGUU----UCCGGUCGCCGUaacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 39168 | 0.71 | 0.890296 |
Target: 5'- cCGCGAggcGGGCCGGCGGUugcgUGgcgUUUAc -3' miRNA: 3'- -GCGUU---UCCGGUCGCCGua--ACaa-AAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 75702 | 0.71 | 0.890296 |
Target: 5'- gGCGAGGGCaaaGGUGGCuUUG-UUUCGa -3' miRNA: 3'- gCGUUUCCGg--UCGCCGuAACaAAAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 38310 | 0.71 | 0.882969 |
Target: 5'- aGCGccgacAAGGCCGGCGGCAUg------- -3' miRNA: 3'- gCGU-----UUCCGGUCGCCGUAacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 98650 | 0.72 | 0.867562 |
Target: 5'- gGCGAGGGCC-GCuGCAUUGUg--CAc -3' miRNA: 3'- gCGUUUCCGGuCGcCGUAACAaaaGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 107848 | 0.7 | 0.939339 |
Target: 5'- uCGCGggcGAGGCCAGCGGCc--------- -3' miRNA: 3'- -GCGU---UUCCGGUCGCCGuaacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 131746 | 0.7 | 0.934157 |
Target: 5'- uGCAuuGGGCCGGCGGCGg-------- -3' miRNA: 3'- gCGUu-UCCGGUCGCCGUaacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 36341 | 0.7 | 0.928702 |
Target: 5'- gCGCGuguacgcGGCCGGCGGCGacuUUGUcgUCu -3' miRNA: 3'- -GCGUuu-----CCGGUCGCCGU---AACAaaAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 124769 | 0.71 | 0.890296 |
Target: 5'- gCGCAcAGGCCGGUGGCGUc------- -3' miRNA: 3'- -GCGUuUCCGGUCGCCGUAacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 121449 | 0.72 | 0.875389 |
Target: 5'- cCGCGccacGGCgCGGCGGCGUUcaaaGUUUUCGg -3' miRNA: 3'- -GCGUuu--CCG-GUCGCCGUAA----CAAAAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 43903 | 0.66 | 0.993748 |
Target: 5'- uGCAGAGGCggggcguuugCGGUGGCAUcugGUaUUCc -3' miRNA: 3'- gCGUUUCCG----------GUCGCCGUAa--CAaAAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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