miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 5' -55.1 NC_001875.2 + 77810 1.12 0.002226
Target:  5'- cACCGAGAACGACGAGUGCCGGUACGCg -3'
miRNA:   3'- -UGGCUCUUGCUGCUCACGGCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 40464 0.8 0.247627
Target:  5'- cCCGAGGGCGugGuGGUGCCGG-GCGUc -3'
miRNA:   3'- uGGCUCUUGCugC-UCACGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 84333 0.78 0.325796
Target:  5'- uACCcGGAGCGGCGAGUggcggagcggcugcGCCGGUagguGCGCg -3'
miRNA:   3'- -UGGcUCUUGCUGCUCA--------------CGGCCA----UGCG- -5'
6784 5' -55.1 NC_001875.2 + 47392 0.77 0.374932
Target:  5'- uUCGGcGGACGGCGAGUGCCuucGGUAUGUc -3'
miRNA:   3'- uGGCU-CUUGCUGCUCACGG---CCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 78003 0.73 0.579012
Target:  5'- uGCgCGAGAccauUGACGAGUugugagcGUCGGUGCGCc -3'
miRNA:   3'- -UG-GCUCUu---GCUGCUCA-------CGGCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 59490 0.73 0.600403
Target:  5'- gGCCGAGAcaagcGCGuCGAGUGCCccauGUGcCGCc -3'
miRNA:   3'- -UGGCUCU-----UGCuGCUCACGGc---CAU-GCG- -5'
6784 5' -55.1 NC_001875.2 + 50030 0.72 0.651623
Target:  5'- cGCCGG--GCGGCGAGgcgGCCGGcccguCGCu -3'
miRNA:   3'- -UGGCUcuUGCUGCUCa--CGGCCau---GCG- -5'
6784 5' -55.1 NC_001875.2 + 110813 0.71 0.682231
Target:  5'- cGCCGcgcAGGugGACGc--GCUGGUGCGCc -3'
miRNA:   3'- -UGGC---UCUugCUGCucaCGGCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 32558 0.71 0.722419
Target:  5'- cGCCGAgGAGCGGCugcagcAGUGCCGc-GCGCa -3'
miRNA:   3'- -UGGCU-CUUGCUGc-----UCACGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 98386 0.7 0.732294
Target:  5'- cCCGAccACGACGAgGUGgCGG-ACGCg -3'
miRNA:   3'- uGGCUcuUGCUGCU-CACgGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 3077 0.7 0.742082
Target:  5'- cGCCGGGGucgcccACGGCGuGcacgcGCCGGgGCGCg -3'
miRNA:   3'- -UGGCUCU------UGCUGCuCa----CGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 122129 0.7 0.751774
Target:  5'- uUCGGGcGCGGCGcG-GCCGGcGCGCa -3'
miRNA:   3'- uGGCUCuUGCUGCuCaCGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 62895 0.7 0.770831
Target:  5'- cGCCGgaAGAcaACGACGGG-GaCCGGUACuuGCa -3'
miRNA:   3'- -UGGC--UCU--UGCUGCUCaC-GGCCAUG--CG- -5'
6784 5' -55.1 NC_001875.2 + 114644 0.7 0.780178
Target:  5'- cGCuCGcGAACGGCGuGUGCuauuuuuggCGGUGCGUc -3'
miRNA:   3'- -UG-GCuCUUGCUGCuCACG---------GCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 28842 0.69 0.789391
Target:  5'- gGCCGAcacGGACGGCGGGcacuugucGCCGcuagaGUACGCu -3'
miRNA:   3'- -UGGCU---CUUGCUGCUCa-------CGGC-----CAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 66101 0.69 0.798463
Target:  5'- cGCCGAGGcccgcGCGGCGGGcgGCgaGGcgGCGCc -3'
miRNA:   3'- -UGGCUCU-----UGCUGCUCa-CGg-CCa-UGCG- -5'
6784 5' -55.1 NC_001875.2 + 91031 0.69 0.798463
Target:  5'- gGCCG-GAACGACuGuguggaugugguGGUGCUGGgcacGCGCa -3'
miRNA:   3'- -UGGCuCUUGCUG-C------------UCACGGCCa---UGCG- -5'
6784 5' -55.1 NC_001875.2 + 40072 0.69 0.816145
Target:  5'- cGCCGcacuACGACGAG-GCCGcgGCGCu -3'
miRNA:   3'- -UGGCucu-UGCUGCUCaCGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 50473 0.68 0.833156
Target:  5'- aAUCaGGAGCGACGcG-GCCGGcgcgUGCGCg -3'
miRNA:   3'- -UGGcUCUUGCUGCuCaCGGCC----AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 84382 0.68 0.838119
Target:  5'- uGCCG-GGGCGGCGucGGUaGCCGGagcuucggcggcgGCGCg -3'
miRNA:   3'- -UGGCuCUUGCUGC--UCA-CGGCCa------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.