miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 5' -55.1 NC_001875.2 + 1372 0.66 0.912242
Target:  5'- cGCUcucGAACGGCGcGUGCuagCGGUGCGUc -3'
miRNA:   3'- -UGGcu-CUUGCUGCuCACG---GCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 3077 0.7 0.742082
Target:  5'- cGCCGGGGucgcccACGGCGuGcacgcGCCGGgGCGCg -3'
miRNA:   3'- -UGGCUCU------UGCUGCuCa----CGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 3160 0.66 0.923668
Target:  5'- -gCGucGGGCGGCGAGUaggugaGCCGGcggccGCGCa -3'
miRNA:   3'- ugGCu-CUUGCUGCUCA------CGGCCa----UGCG- -5'
6784 5' -55.1 NC_001875.2 + 5338 0.66 0.939008
Target:  5'- cGCCGAGuGCGGgGcGGUGCUGGU-Ca- -3'
miRNA:   3'- -UGGCUCuUGCUgC-UCACGGCCAuGcg -5'
6784 5' -55.1 NC_001875.2 + 10284 0.66 0.929021
Target:  5'- cGCCGuGGugGuCGAGgccuuUGCCGacUACGCg -3'
miRNA:   3'- -UGGCuCUugCuGCUC-----ACGGCc-AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 12370 0.68 0.84139
Target:  5'- cCCGAcGACGA-GGGUGCCacGGUGcCGCu -3'
miRNA:   3'- uGGCUcUUGCUgCUCACGG--CCAU-GCG- -5'
6784 5' -55.1 NC_001875.2 + 14631 0.68 0.842203
Target:  5'- cCCGAGuacggcuuucgcuuCGACGAgGUGCCGGccUGCa -3'
miRNA:   3'- uGGCUCuu------------GCUGCU-CACGGCCauGCG- -5'
6784 5' -55.1 NC_001875.2 + 16231 0.66 0.918074
Target:  5'- -gCGAGugugacugcGGCGACGAG-GCCGucACGCg -3'
miRNA:   3'- ugGCUC---------UUGCUGCUCaCGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 19442 0.66 0.939483
Target:  5'- gGCCGGGAACGuCGGGgaucUCGGggagcucaggcucggGCGCu -3'
miRNA:   3'- -UGGCUCUUGCuGCUCac--GGCCa--------------UGCG- -5'
6784 5' -55.1 NC_001875.2 + 28842 0.69 0.789391
Target:  5'- gGCCGAcacGGACGGCGGGcacuugucGCCGcuagaGUACGCu -3'
miRNA:   3'- -UGGCU---CUUGCUGCUCa-------CGGC-----CAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 29784 0.68 0.849434
Target:  5'- gGCCGcGGGugGACGGgcGUGUCaGGcUACGCc -3'
miRNA:   3'- -UGGC-UCUugCUGCU--CACGG-CC-AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 31960 0.66 0.934134
Target:  5'- uGCCGGcGACGACGAacgcGUG-UGGcGCGCg -3'
miRNA:   3'- -UGGCUcUUGCUGCU----CACgGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 32558 0.71 0.722419
Target:  5'- cGCCGAgGAGCGGCugcagcAGUGCCGc-GCGCa -3'
miRNA:   3'- -UGGCU-CUUGCUGc-----UCACGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 35356 0.66 0.918074
Target:  5'- gGCCGAGAuacacgggcAgGugGAGcaGCUGGagGCGCu -3'
miRNA:   3'- -UGGCUCU---------UgCugCUCa-CGGCCa-UGCG- -5'
6784 5' -55.1 NC_001875.2 + 39327 0.68 0.872351
Target:  5'- cGCCGGGcGCGcACGAGcGCCcGUuuuGCGCc -3'
miRNA:   3'- -UGGCUCuUGC-UGCUCaCGGcCA---UGCG- -5'
6784 5' -55.1 NC_001875.2 + 40072 0.69 0.816145
Target:  5'- cGCCGcacuACGACGAG-GCCGcgGCGCu -3'
miRNA:   3'- -UGGCucu-UGCUGCUCaCGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 40464 0.8 0.247627
Target:  5'- cCCGAGGGCGugGuGGUGCCGG-GCGUc -3'
miRNA:   3'- uGGCUCUUGCugC-UCACGGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 42490 0.67 0.893328
Target:  5'- uACCGAcGAagccaACGACGAGUGCauuGUuuGCa -3'
miRNA:   3'- -UGGCU-CU-----UGCUGCUCACGgc-CAugCG- -5'
6784 5' -55.1 NC_001875.2 + 46778 0.68 0.872351
Target:  5'- cACCGcGAugGACGAuuuuacGUGCCGcc-CGCa -3'
miRNA:   3'- -UGGCuCUugCUGCU------CACGGCcauGCG- -5'
6784 5' -55.1 NC_001875.2 + 47028 0.67 0.899866
Target:  5'- cACCGAGGGCG--GAGUGgUGG-GCGUg -3'
miRNA:   3'- -UGGCUCUUGCugCUCACgGCCaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.