miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 35065 0.68 0.690554
Target:  5'- gGUGCCCGUGcUGGUuUGCggccgcaucgACGGCGu -3'
miRNA:   3'- gCGCGGGCACuACCGcACGa---------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 37599 0.7 0.609372
Target:  5'- cCGCGgCCGgccgcacGgcGGCGUGCUcgccgACGACAu -3'
miRNA:   3'- -GCGCgGGCa------CuaCCGCACGA-----UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 38284 0.66 0.813798
Target:  5'- aGCGCgCGUacgacgacgcGGUGGCGaGCgcCGACAa -3'
miRNA:   3'- gCGCGgGCA----------CUACCGCaCGauGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 39936 0.7 0.589089
Target:  5'- aGUGCCCGUuucaaauaaaGGUGuGCGUGa-GCGACAg -3'
miRNA:   3'- gCGCGGGCA----------CUAC-CGCACgaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 43412 0.67 0.739997
Target:  5'- uGCGCUCGUuaacGccGGCGUaCUugGACAg -3'
miRNA:   3'- gCGCGGGCA----CuaCCGCAcGAugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 50013 0.7 0.589089
Target:  5'- uCGCGCCCGUGAauuUGGCcacgGUGUacucguUGgGGCAg -3'
miRNA:   3'- -GCGCGGGCACU---ACCG----CACG------AUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 50018 0.67 0.77793
Target:  5'- gGCGCgCGUGGUcgccgGGCG-GCgagGCGGCc -3'
miRNA:   3'- gCGCGgGCACUA-----CCGCaCGa--UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 58265 0.67 0.768618
Target:  5'- gGCGCUCGUGucacccggGGUGUcGUcGCGACGg -3'
miRNA:   3'- gCGCGGGCACua------CCGCA-CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 66306 0.7 0.599218
Target:  5'- gCGCGgCCGgcgaguUGAUGGCGUGg-GCGGCc -3'
miRNA:   3'- -GCGCgGGC------ACUACCGCACgaUGCUGu -5'
6787 3' -57.8 NC_001875.2 + 68610 0.67 0.759186
Target:  5'- aCGCGUuuGUGGUgacgGGCGacGCggGCGACGu -3'
miRNA:   3'- -GCGCGggCACUA----CCGCa-CGa-UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 68694 0.67 0.768618
Target:  5'- gCGUGCCCGUGGaccCGUGCgcCGGCc -3'
miRNA:   3'- -GCGCGGGCACUaccGCACGauGCUGu -5'
6787 3' -57.8 NC_001875.2 + 68999 0.67 0.76768
Target:  5'- aGUGCCgcgggggcaagcaCGUGGUGGCGcGCUGCcccGACc -3'
miRNA:   3'- gCGCGG-------------GCACUACCGCaCGAUG---CUGu -5'
6787 3' -57.8 NC_001875.2 + 70021 0.7 0.558914
Target:  5'- aCGUGCgCCGUGuUGGCauugauugugcgGUcGCUGCGACGg -3'
miRNA:   3'- -GCGCG-GGCACuACCG------------CA-CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 73606 0.68 0.710538
Target:  5'- aGCGCCaacUGuugcGGCGgcgGCUGCGGCGg -3'
miRNA:   3'- gCGCGGgc-ACua--CCGCa--CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 74622 1.08 0.002015
Target:  5'- uCGCGCCCGUGAUGGCGUGCUACGACAu -3'
miRNA:   3'- -GCGCGGGCACUACCGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75258 0.67 0.739997
Target:  5'- gGCGUCgGcGAUGGCGgcgGCgucgGCGAUg -3'
miRNA:   3'- gCGCGGgCaCUACCGCa--CGa---UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 75306 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75336 0.67 0.749642
Target:  5'- gGUGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75378 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75426 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.