miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 1210 0.68 0.680485
Target:  5'- uGCGCCUGcuccUGAUcGGCGUGCaggauccCGACGc -3'
miRNA:   3'- gCGCGGGC----ACUA-CCGCACGau-----GCUGU- -5'
6787 3' -57.8 NC_001875.2 + 5814 0.74 0.36728
Target:  5'- gGCGCCacuuUGAUGGCGaggauaGCUGCGACGu -3'
miRNA:   3'- gCGCGGgc--ACUACCGCa-----CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 6990 0.66 0.805055
Target:  5'- aGCgGCCgGUGugGGUGUGCUGCuGGCc -3'
miRNA:   3'- gCG-CGGgCACuaCCGCACGAUG-CUGu -5'
6787 3' -57.8 NC_001875.2 + 10343 0.76 0.279905
Target:  5'- cCGCGCCCGUGAUucaaauuGCGccggGCUACGGCc -3'
miRNA:   3'- -GCGCGGGCACUAc------CGCa---CGAUGCUGu -5'
6787 3' -57.8 NC_001875.2 + 10469 0.67 0.739997
Target:  5'- gCGCGCUCaGUGaAUGGCGcuUGCUgaACGAg- -3'
miRNA:   3'- -GCGCGGG-CAC-UACCGC--ACGA--UGCUgu -5'
6787 3' -57.8 NC_001875.2 + 10940 0.66 0.821527
Target:  5'- uGCGCCacaaaaaCGUGGUGGCGU-UUGUGACGc -3'
miRNA:   3'- gCGCGG-------GCACUACCGCAcGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 11006 0.66 0.783455
Target:  5'- gGCGCgCGUGcccAUGGUGUGCcugcccaugauggGCGACc -3'
miRNA:   3'- gCGCGgGCAC---UACCGCACGa------------UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 12326 0.66 0.830786
Target:  5'- aCGCGCCCGgccagcGAgaGGuCGUGUUugACGGCu -3'
miRNA:   3'- -GCGCGGGCa-----CUa-CC-GCACGA--UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 12674 0.67 0.768618
Target:  5'- gCGCGCCgCGU--UGGCcggGUGUgGCGGCAa -3'
miRNA:   3'- -GCGCGG-GCAcuACCG---CACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 13720 0.66 0.822378
Target:  5'- uGCGCCCGccuUGGCGgcaaugcgGUUGCG-CAg -3'
miRNA:   3'- gCGCGGGCacuACCGCa-------CGAUGCuGU- -5'
6787 3' -57.8 NC_001875.2 + 14191 0.7 0.589089
Target:  5'- aGCGCCuaCGUGAcuuGUGUGUUGCGAUAa -3'
miRNA:   3'- gCGCGG--GCACUac-CGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 16210 0.67 0.768618
Target:  5'- uGCgGCCCGUGuuugagucgGGCGagugUGaCUGCGGCGa -3'
miRNA:   3'- gCG-CGGGCACua-------CCGC----AC-GAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 17661 0.71 0.539037
Target:  5'- gCGCGCUggcgGUGAagcUGGCGUuuagccgacgcgGCUGCGACAg -3'
miRNA:   3'- -GCGCGGg---CACU---ACCGCA------------CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 19480 0.66 0.822378
Target:  5'- gGCGCUgGUGcUGGCG-GCUcgGGCAg -3'
miRNA:   3'- gCGCGGgCACuACCGCaCGAugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 23015 0.68 0.710538
Target:  5'- gCGCGCaCCGUGuucaGCGUGUUG-GACAg -3'
miRNA:   3'- -GCGCG-GGCACuac-CGCACGAUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 28640 0.72 0.481048
Target:  5'- gCGUGCCCGUGucGUGGaaCGUGUggaACGGCGg -3'
miRNA:   3'- -GCGCGGGCAC--UACC--GCACGa--UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 29292 0.66 0.787112
Target:  5'- gCGCGgUCGUG-UGGCGUGUcgUGCG-CGu -3'
miRNA:   3'- -GCGCgGGCACuACCGCACG--AUGCuGU- -5'
6787 3' -57.8 NC_001875.2 + 30302 0.74 0.391863
Target:  5'- aCGCGUCCGUGGccGCGUGCagguuaaACGACGg -3'
miRNA:   3'- -GCGCGGGCACUacCGCACGa------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 33899 0.66 0.813798
Target:  5'- aGCGCCuCGgGGUcGGUuugGUGCaGCGACAc -3'
miRNA:   3'- gCGCGG-GCaCUA-CCG---CACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 33963 0.67 0.77793
Target:  5'- aCGUGCCCGUGc-GGCGcGCagcCGACc -3'
miRNA:   3'- -GCGCGGGCACuaCCGCaCGau-GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.