miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 16210 0.67 0.768618
Target:  5'- uGCgGCCCGUGuuugagucgGGCGagugUGaCUGCGGCGa -3'
miRNA:   3'- gCG-CGGGCACua-------CCGC----AC-GAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 35065 0.68 0.690554
Target:  5'- gGUGCCCGUGcUGGUuUGCggccgcaucgACGGCGu -3'
miRNA:   3'- gCGCGGGCACuACCGcACGa---------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 111090 0.68 0.714505
Target:  5'- gGCGCC-GUGAaaaccuuuuguugcGGCGUGC-ACGGCAg -3'
miRNA:   3'- gCGCGGgCACUa-------------CCGCACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 10469 0.67 0.739997
Target:  5'- gCGCGCUCaGUGaAUGGCGcuUGCUgaACGAg- -3'
miRNA:   3'- -GCGCGGG-CAC-UACCGC--ACGA--UGCUgu -5'
6787 3' -57.8 NC_001875.2 + 75258 0.67 0.739997
Target:  5'- gGCGUCgGcGAUGGCGgcgGCgucgGCGAUg -3'
miRNA:   3'- gCGCGGgCaCUACCGCa--CGa---UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 75336 0.67 0.749642
Target:  5'- gGUGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 68610 0.67 0.759186
Target:  5'- aCGCGUuuGUGGUgacgGGCGacGCggGCGACGu -3'
miRNA:   3'- -GCGCGggCACUA----CCGCa-CGa-UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 103924 0.67 0.759186
Target:  5'- uGCGaCCGUGuaaacGCGgGCUGCGACGg -3'
miRNA:   3'- gCGCgGGCACuac--CGCaCGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 68999 0.67 0.76768
Target:  5'- aGUGCCgcgggggcaagcaCGUGGUGGCGcGCUGCcccGACc -3'
miRNA:   3'- gCGCGG-------------GCACUACCGCaCGAUG---CUGu -5'
6787 3' -57.8 NC_001875.2 + 75528 0.68 0.680485
Target:  5'- gGCGUUgGUGAUGGCGUuggugauaGCgucgGCGAUg -3'
miRNA:   3'- gCGCGGgCACUACCGCA--------CGa---UGCUGu -5'
6787 3' -57.8 NC_001875.2 + 1210 0.68 0.680485
Target:  5'- uGCGCCUGcuccUGAUcGGCGUGCaggauccCGACGc -3'
miRNA:   3'- gCGCGGGC----ACUA-CCGCACGau-----GCUGU- -5'
6787 3' -57.8 NC_001875.2 + 78709 0.69 0.670377
Target:  5'- aCGCGCCCGUGu--GCGUGUcguCGuCAa -3'
miRNA:   3'- -GCGCGGGCACuacCGCACGau-GCuGU- -5'
6787 3' -57.8 NC_001875.2 + 30302 0.74 0.391863
Target:  5'- aCGCGUCCGUGGccGCGUGCagguuaaACGACGg -3'
miRNA:   3'- -GCGCGGGCACUacCGCACGa------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75306 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75378 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75426 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75456 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75486 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 66306 0.7 0.599218
Target:  5'- gCGCGgCCGgcgaguUGAUGGCGUGg-GCGGCc -3'
miRNA:   3'- -GCGCgGGC------ACUACCGCACgaUGCUGu -5'
6787 3' -57.8 NC_001875.2 + 37599 0.7 0.609372
Target:  5'- cCGCGgCCGgccgcacGgcGGCGUGCUcgccgACGACAu -3'
miRNA:   3'- -GCGCgGGCa------CuaCCGCACGA-----UGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.