miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 74622 1.08 0.002015
Target:  5'- uCGCGCCCGUGAUGGCGUGCUACGACAu -3'
miRNA:   3'- -GCGCGGGCACUACCGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 10343 0.76 0.279905
Target:  5'- cCGCGCCCGUGAUucaaauuGCGccggGCUACGGCc -3'
miRNA:   3'- -GCGCGGGCACUAc------CGCa---CGAUGCUGu -5'
6787 3' -57.8 NC_001875.2 + 5814 0.74 0.36728
Target:  5'- gGCGCCacuuUGAUGGCGaggauaGCUGCGACGu -3'
miRNA:   3'- gCGCGGgc--ACUACCGCa-----CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 30302 0.74 0.391863
Target:  5'- aCGCGUCCGUGGccGCGUGCagguuaaACGACGg -3'
miRNA:   3'- -GCGCGGGCACUacCGCACGa------UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 28640 0.72 0.481048
Target:  5'- gCGUGCCCGUGucGUGGaaCGUGUggaACGGCGg -3'
miRNA:   3'- -GCGCGGGCAC--UACC--GCACGa--UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 128011 0.71 0.509698
Target:  5'- uGCGgCCGcGccGGCGUGCgccgACGACGg -3'
miRNA:   3'- gCGCgGGCaCuaCCGCACGa---UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 17661 0.71 0.539037
Target:  5'- gCGCGCUggcgGUGAagcUGGCGUuuagccgacgcgGCUGCGACAg -3'
miRNA:   3'- -GCGCGGg---CACU---ACCGCA------------CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75306 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75486 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75456 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75426 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 75378 0.7 0.558914
Target:  5'- gGCGUUgGUGAUGGCGUcgGCgAUGGCGu -3'
miRNA:   3'- gCGCGGgCACUACCGCA--CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 70021 0.7 0.558914
Target:  5'- aCGUGCgCCGUGuUGGCauugauugugcgGUcGCUGCGACGg -3'
miRNA:   3'- -GCGCG-GGCACuACCG------------CA-CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 98494 0.7 0.578991
Target:  5'- cCGCGUgCGUGAuUGGC-UGCcggGCGACGa -3'
miRNA:   3'- -GCGCGgGCACU-ACCGcACGa--UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 39936 0.7 0.589089
Target:  5'- aGUGCCCGUuucaaauaaaGGUGuGCGUGa-GCGACAg -3'
miRNA:   3'- gCGCGGGCA----------CUAC-CGCACgaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 50013 0.7 0.589089
Target:  5'- uCGCGCCCGUGAauuUGGCcacgGUGUacucguUGgGGCAg -3'
miRNA:   3'- -GCGCGGGCACU---ACCG----CACG------AUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 14191 0.7 0.589089
Target:  5'- aGCGCCuaCGUGAcuuGUGUGUUGCGAUAa -3'
miRNA:   3'- gCGCGG--GCACUac-CGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 66306 0.7 0.599218
Target:  5'- gCGCGgCCGgcgaguUGAUGGCGUGg-GCGGCc -3'
miRNA:   3'- -GCGCgGGC------ACUACCGCACgaUGCUGu -5'
6787 3' -57.8 NC_001875.2 + 102984 0.7 0.599218
Target:  5'- uGUGCCCugcgggcacGUGGUGGCGUGC---GGCAa -3'
miRNA:   3'- gCGCGGG---------CACUACCGCACGaugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 37599 0.7 0.609372
Target:  5'- cCGCGgCCGgccgcacGgcGGCGUGCUcgccgACGACAu -3'
miRNA:   3'- -GCGCgGGCa------CuaCCGCACGA-----UGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.