miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6788 3' -63.3 NC_001875.2 + 66307 0.66 0.540614
Target:  5'- cGCgGCCGGCGaguugaUGGCGUgGGcGG-CCGc -3'
miRNA:   3'- uCG-CGGCCGU------ACCGCAgCC-CCaGGUu -5'
6788 3' -63.3 NC_001875.2 + 61501 0.66 0.521389
Target:  5'- cGCGCCGGCucGGCGcCGcaGUCCGc -3'
miRNA:   3'- uCGCGGCCGuaCCGCaGCccCAGGUu -5'
6788 3' -63.3 NC_001875.2 + 81980 0.66 0.511876
Target:  5'- uGGCGCCGGCAaGGCG-CGccGG-CCGg -3'
miRNA:   3'- -UCGCGGCCGUaCCGCaGCc-CCaGGUu -5'
6788 3' -63.3 NC_001875.2 + 63137 0.66 0.502436
Target:  5'- gGGCGCgCGGCc-GGCGcacGGGUCCAc -3'
miRNA:   3'- -UCGCG-GCCGuaCCGCagcCCCAGGUu -5'
6788 3' -63.3 NC_001875.2 + 99601 0.66 0.502436
Target:  5'- cGCGCCGGUAUGucugcGCGUUGGcGUUCu- -3'
miRNA:   3'- uCGCGGCCGUAC-----CGCAGCCcCAGGuu -5'
6788 3' -63.3 NC_001875.2 + 105816 0.67 0.478261
Target:  5'- aAGCGUCuuCAUGGUuuccucgacgcggcuGUUGGGGUCCAGc -3'
miRNA:   3'- -UCGCGGccGUACCG---------------CAGCCCCAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 18189 0.67 0.474593
Target:  5'- cGGUGCCGGCG-GGCGUaggcgUGGuGGUugcCCAAu -3'
miRNA:   3'- -UCGCGGCCGUaCCGCA-----GCC-CCA---GGUU- -5'
6788 3' -63.3 NC_001875.2 + 112833 0.67 0.447543
Target:  5'- uAGCGaCUGGaaCGUGGCGUCGucGUCCGu -3'
miRNA:   3'- -UCGC-GGCC--GUACCGCAGCccCAGGUu -5'
6788 3' -63.3 NC_001875.2 + 61603 0.67 0.429993
Target:  5'- gGGCGCCGGCGgcgcuucgGGCuguGUCGGcGGcgCCu- -3'
miRNA:   3'- -UCGCGGCCGUa-------CCG---CAGCC-CCa-GGuu -5'
6788 3' -63.3 NC_001875.2 + 63446 0.67 0.429993
Target:  5'- cGGCGUCGGCGgccagccgcgaGGCGUUGGuuUCCAGc -3'
miRNA:   3'- -UCGCGGCCGUa----------CCGCAGCCccAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 36418 0.67 0.429993
Target:  5'- cGCugGCCGGCGccgcGGUGUCGGGcuggugcuuaaaGUCCAGg -3'
miRNA:   3'- uCG--CGGCCGUa---CCGCAGCCC------------CAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 75257 0.68 0.421371
Target:  5'- cGGCGUCGGCgAUGGCGgCGGcGUCg-- -3'
miRNA:   3'- -UCGCGGCCG-UACCGCaGCCcCAGguu -5'
6788 3' -63.3 NC_001875.2 + 46501 0.68 0.387952
Target:  5'- cGGCGUCGGCGUucgcGGCGggCGGGG-CgAGa -3'
miRNA:   3'- -UCGCGGCCGUA----CCGCa-GCCCCaGgUU- -5'
6788 3' -63.3 NC_001875.2 + 60495 0.68 0.379874
Target:  5'- uAGCGUCGGCGU--UGUCGGcGGUCaCAAa -3'
miRNA:   3'- -UCGCGGCCGUAccGCAGCC-CCAG-GUU- -5'
6788 3' -63.3 NC_001875.2 + 41615 0.69 0.364059
Target:  5'- gGGCGCgGGCAUcGGUaUCGGgucgaacaGGUCCGAg -3'
miRNA:   3'- -UCGCGgCCGUA-CCGcAGCC--------CCAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 95368 0.69 0.356324
Target:  5'- cGCGUCGGCGgaaaacGGCGUCGu-GUCCAAu -3'
miRNA:   3'- uCGCGGCCGUa-----CCGCAGCccCAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 50343 0.7 0.312373
Target:  5'- uGGUGUCGGCGucguUGGCGUCGGG--CCGc -3'
miRNA:   3'- -UCGCGGCCGU----ACCGCAGCCCcaGGUu -5'
6788 3' -63.3 NC_001875.2 + 114013 0.72 0.237102
Target:  5'- cGGCGCCcucgcGCAUGGCGgccgCGcGGUCCAGa -3'
miRNA:   3'- -UCGCGGc----CGUACCGCa---GCcCCAGGUU- -5'
6788 3' -63.3 NC_001875.2 + 100142 0.72 0.237102
Target:  5'- uGCGCCGGC--GGCGcgcaagCGGcGGUCCAc -3'
miRNA:   3'- uCGCGGCCGuaCCGCa-----GCC-CCAGGUu -5'
6788 3' -63.3 NC_001875.2 + 75671 0.72 0.220825
Target:  5'- cGGCGUCGGCgAUGGCGUUGGcGUCg-- -3'
miRNA:   3'- -UCGCGGCCG-UACCGCAGCCcCAGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.