miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6788 5' -54.4 NC_001875.2 + 105888 0.66 0.94567
Target:  5'- cGGUgcaguACCCgauggCGGGCGCGgcggcCACCACg -3'
miRNA:   3'- -CCAacu--UGGG-----GCCUGCGUa----GUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 51656 0.66 0.94567
Target:  5'- uGUUGGGCUCCuauuacGGCGC-UCACUACUu -3'
miRNA:   3'- cCAACUUGGGGc-----CUGCGuAGUGGUGA- -5'
6788 5' -54.4 NC_001875.2 + 91939 0.66 0.941088
Target:  5'- aGGUUGuuuGCCagguCCGGgcuauggugcaGCGCGUCGCCcggGCUg -3'
miRNA:   3'- -CCAACu--UGG----GGCC-----------UGCGUAGUGG---UGA- -5'
6788 5' -54.4 NC_001875.2 + 37104 0.66 0.931195
Target:  5'- cGUgGGugUgCGGGCGCggCGCCGCg -3'
miRNA:   3'- cCAaCUugGgGCCUGCGuaGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 124948 0.66 0.924239
Target:  5'- cGUUGGuCUCgGGAaagcucuguuugacCGCGUCGCCGCg -3'
miRNA:   3'- cCAACUuGGGgCCU--------------GCGUAGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 76501 0.67 0.920322
Target:  5'- aGGcgGcGCCCCcgaagcGGCGCGUCAUCACc -3'
miRNA:   3'- -CCaaCuUGGGGc-----CUGCGUAGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 125609 0.67 0.920322
Target:  5'- uGGUgGAGCggCUGGGCGUGUCGCCGa- -3'
miRNA:   3'- -CCAaCUUGg-GGCCUGCGUAGUGGUga -5'
6788 5' -54.4 NC_001875.2 + 54965 0.67 0.920322
Target:  5'- ---cGuuUgCCGGACGCGUCGCuCGCg -3'
miRNA:   3'- ccaaCuuGgGGCCUGCGUAGUG-GUGa -5'
6788 5' -54.4 NC_001875.2 + 80117 0.67 0.918606
Target:  5'- aGUUGAagGCCCaUGGgucgucgcacucguGCGCGUCGCUGCUu -3'
miRNA:   3'- cCAACU--UGGG-GCC--------------UGCGUAGUGGUGA- -5'
6788 5' -54.4 NC_001875.2 + 105255 0.67 0.914518
Target:  5'- ---aGGugUgCGGGCGCuguuUCACCACa -3'
miRNA:   3'- ccaaCUugGgGCCUGCGu---AGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 82196 0.67 0.914518
Target:  5'- --aUGGGCgCCGGcggccgcuCGUGUCGCCGCUg -3'
miRNA:   3'- ccaACUUGgGGCCu-------GCGUAGUGGUGA- -5'
6788 5' -54.4 NC_001875.2 + 31565 0.67 0.908469
Target:  5'- aGGUUGGGCCCggCGGcuuccuugcGCGCcgC-CCACa -3'
miRNA:   3'- -CCAACUUGGG--GCC---------UGCGuaGuGGUGa -5'
6788 5' -54.4 NC_001875.2 + 30656 0.67 0.908469
Target:  5'- aGUUGGGCgCCGGcACGUAauugaccagCGCCACg -3'
miRNA:   3'- cCAACUUGgGGCC-UGCGUa--------GUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 93617 0.67 0.907851
Target:  5'- uGGggGGACCgCGaGCGCAUCGaggccaacuuuacCCACUa -3'
miRNA:   3'- -CCaaCUUGGgGCcUGCGUAGU-------------GGUGA- -5'
6788 5' -54.4 NC_001875.2 + 115466 0.68 0.888885
Target:  5'- cGUUGAGCUagCGGGCGCG--GCCAUUg -3'
miRNA:   3'- cCAACUUGGg-GCCUGCGUagUGGUGA- -5'
6788 5' -54.4 NC_001875.2 + 45974 0.69 0.835315
Target:  5'- cGGcgGuACCCCagcgugacGGACGCG-CACCACa -3'
miRNA:   3'- -CCaaCuUGGGG--------CCUGCGUaGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 124767 0.69 0.826848
Target:  5'- --cUGcGCacaggCCGGugGCGUCGCCGCa -3'
miRNA:   3'- ccaACuUGg----GGCCugCGUAGUGGUGa -5'
6788 5' -54.4 NC_001875.2 + 71535 0.69 0.809377
Target:  5'- ---aGAACCgCUGcGACGCGUCGCCuGCa -3'
miRNA:   3'- ccaaCUUGG-GGC-CUGCGUAGUGG-UGa -5'
6788 5' -54.4 NC_001875.2 + 128773 0.7 0.791246
Target:  5'- uGGgc-GACCCCGGcGCGCcgCugCGCg -3'
miRNA:   3'- -CCaacUUGGGGCC-UGCGuaGugGUGa -5'
6788 5' -54.4 NC_001875.2 + 61630 0.7 0.781955
Target:  5'- cGGcgGcGCCUCGGGCGCccaguggucgccGUCGCCGCc -3'
miRNA:   3'- -CCaaCuUGGGGCCUGCG------------UAGUGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.