miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6794 5' -57.3 NC_001875.2 + 62565 0.65 0.84153
Target:  5'- gCGGguggacuugccgccGCCACGGCucGAGcCGCGGCCc- -3'
miRNA:   3'- aGCC--------------CGGUGCCGcuUUU-GCGCUGGuu -5'
6794 5' -57.3 NC_001875.2 + 86258 0.66 0.835771
Target:  5'- gUCGGGCCcgcuggacuugGCGGCGAuacagGAGCGCa----- -3'
miRNA:   3'- -AGCCCGG-----------UGCCGCU-----UUUGCGcugguu -5'
6794 5' -57.3 NC_001875.2 + 109836 0.66 0.835771
Target:  5'- aUUGGGCagugcCGGCGGAuuugcuGCGCGcguuuGCCAAg -3'
miRNA:   3'- -AGCCCGgu---GCCGCUUu-----UGCGC-----UGGUU- -5'
6794 5' -57.3 NC_001875.2 + 32480 0.66 0.835771
Target:  5'- --uGGCCACuuGGCGG--GCGCGcCCAAg -3'
miRNA:   3'- agcCCGGUG--CCGCUuuUGCGCuGGUU- -5'
6794 5' -57.3 NC_001875.2 + 46518 0.66 0.835771
Target:  5'- gCGGGCgG-GGCGAGAGCGC--CCGc -3'
miRNA:   3'- aGCCCGgUgCCGCUUUUGCGcuGGUu -5'
6794 5' -57.3 NC_001875.2 + 22823 0.66 0.834941
Target:  5'- aUUGGuguuguucauuucGCCGCGaaGCGuuuGCGCGACCGAg -3'
miRNA:   3'- -AGCC-------------CGGUGC--CGCuuuUGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 106546 0.66 0.827387
Target:  5'- cUGGGUCGa--CGAGcGCGCGACCAGu -3'
miRNA:   3'- aGCCCGGUgccGCUUuUGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 12403 0.66 0.827387
Target:  5'- gUCGGGCCGCuGUuugccGCGCG-CCAAg -3'
miRNA:   3'- -AGCCCGGUGcCGcuuu-UGCGCuGGUU- -5'
6794 5' -57.3 NC_001875.2 + 10140 0.66 0.827387
Target:  5'- uUCGGGCguguuccgcaagCGCGGCGugGugGCcgacgaGACCAc -3'
miRNA:   3'- -AGCCCG------------GUGCCGCuuUugCG------CUGGUu -5'
6794 5' -57.3 NC_001875.2 + 96072 0.66 0.827387
Target:  5'- aCGGGUCAaaaGGUGc--ACGUGACUAAa -3'
miRNA:   3'- aGCCCGGUg--CCGCuuuUGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 102704 0.66 0.827387
Target:  5'- aCuGGCCAgGGCGAcaAGACGCGGu--- -3'
miRNA:   3'- aGcCCGGUgCCGCU--UUUGCGCUgguu -5'
6794 5' -57.3 NC_001875.2 + 62201 0.66 0.826538
Target:  5'- gCGGGCUgaggccgACGGCGuccaccuCGCGcGCCAAc -3'
miRNA:   3'- aGCCCGG-------UGCCGCuuuu---GCGC-UGGUU- -5'
6794 5' -57.3 NC_001875.2 + 43109 0.66 0.826538
Target:  5'- aCGGGCCGugcucguuaaacuCGGCGcgcAUGCGcCCAAa -3'
miRNA:   3'- aGCCCGGU-------------GCCGCuuuUGCGCuGGUU- -5'
6794 5' -57.3 NC_001875.2 + 125464 0.66 0.821411
Target:  5'- cCGGGCCgcGCGGUGcccgacgacgacauCGUGGCCGAg -3'
miRNA:   3'- aGCCCGG--UGCCGCuuuu----------GCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 94258 0.66 0.818823
Target:  5'- --cGGCCGCGGCGcu--CGCG-CCGg -3'
miRNA:   3'- agcCCGGUGCCGCuuuuGCGCuGGUu -5'
6794 5' -57.3 NC_001875.2 + 63721 0.66 0.818823
Target:  5'- gUCGcGGCgACGGCGG--GCGCuucGCCGg -3'
miRNA:   3'- -AGC-CCGgUGCCGCUuuUGCGc--UGGUu -5'
6794 5' -57.3 NC_001875.2 + 19123 0.66 0.818823
Target:  5'- aCGaGGCCACGcucGUGGgccAAGCGCuGGCCAGc -3'
miRNA:   3'- aGC-CCGGUGC---CGCU---UUUGCG-CUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 52184 0.66 0.818823
Target:  5'- uUUGGGCacggucaacuugCugGGCGAcuGCGCG-CCGu -3'
miRNA:   3'- -AGCCCG------------GugCCGCUuuUGCGCuGGUu -5'
6794 5' -57.3 NC_001875.2 + 111976 0.66 0.818823
Target:  5'- aCGGcGCC-CGcGCcgcGACGCGGCCGAg -3'
miRNA:   3'- aGCC-CGGuGC-CGcuuUUGCGCUGGUU- -5'
6794 5' -57.3 NC_001875.2 + 7384 0.66 0.810088
Target:  5'- aUC-GGCCAC-GCGGuuGCGCGACgCGGu -3'
miRNA:   3'- -AGcCCGGUGcCGCUuuUGCGCUG-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.