Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
681 | 3' | -47.3 | AC_000018.1 | + | 10874 | 1.11 | 0.002273 |
Target: 5'- cAGCAGCUACAACAACAGCCACAAAAGg -3' miRNA: 3'- -UCGUCGAUGUUGUUGUCGGUGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 11145 | 1.11 | 0.002273 |
Target: 5'- cAGCAGCUACAACAACAGCCACAAAAGg -3' miRNA: 3'- -UCGUCGAUGUUGUUGUCGGUGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 3716 | 0.77 | 0.386638 |
Target: 5'- cAGCAGUaGCGGCGGCGGCUGCAGc-- -3' miRNA: 3'- -UCGUCGaUGUUGUUGUCGGUGUUuuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 3654 | 0.75 | 0.494551 |
Target: 5'- uGCAGCUGCAGCcGCcGCCGCu---- -3' miRNA: 3'- uCGUCGAUGUUGuUGuCGGUGuuuuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 10924 | 0.75 | 0.506113 |
Target: 5'- uGCGGCUGCAGCcguCAGCgGCGcgGGa -3' miRNA: 3'- uCGUCGAUGUUGuu-GUCGgUGUuuUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 11195 | 0.75 | 0.506113 |
Target: 5'- uGCGGCUGCAGCcguCAGCgGCGcgGGa -3' miRNA: 3'- uCGUCGAUGUUGuu-GUCGgUGUuuUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 16233 | 0.73 | 0.577572 |
Target: 5'- cGCGGCcacggcgGCAGCAGCGGCCAUu---- -3' miRNA: 3'- uCGUCGa------UGUUGUUGUCGGUGuuuuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 1923 | 0.73 | 0.614194 |
Target: 5'- aAGaaaAGCUACAGCAGCAGCaguucuacCAGGAGu -3' miRNA: 3'- -UCg--UCGAUGUUGUUGUCGgu------GUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 17384 | 0.73 | 0.626457 |
Target: 5'- uGGCAGUguUGCGGCGGCGGCgACGGcGAGu -3' miRNA: 3'- -UCGUCG--AUGUUGUUGUCGgUGUU-UUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 26564 | 0.72 | 0.675432 |
Target: 5'- cAGCAGUuagaaaaucUACAACAAguGCaGCAGGAGg -3' miRNA: 3'- -UCGUCG---------AUGUUGUUguCGgUGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 11252 | 0.71 | 0.711678 |
Target: 5'- cGCcGCUgACGGCuGCAGCCGCAGuAGu -3' miRNA: 3'- uCGuCGA-UGUUGuUGUCGGUGUUuUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 10980 | 0.71 | 0.711678 |
Target: 5'- cGCcGCUgACGGCuGCAGCCGCAGuAGu -3' miRNA: 3'- uCGuCGA-UGUUGuUGUCGGUGUUuUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 4963 | 0.7 | 0.781115 |
Target: 5'- cAGCGGCUuCAGCccguCAGCCAUggGc- -3' miRNA: 3'- -UCGUCGAuGUUGuu--GUCGGUGuuUuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 16194 | 0.7 | 0.792107 |
Target: 5'- cGCGGCUucaggugccaGCAGCGGCAGgucCCGCAGGc- -3' miRNA: 3'- uCGUCGA----------UGUUGUUGUC---GGUGUUUuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 15506 | 0.69 | 0.823781 |
Target: 5'- cAGCAGCUcCGACA--GGCCACu---- -3' miRNA: 3'- -UCGUCGAuGUUGUugUCGGUGuuuuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 13693 | 0.69 | 0.841729 |
Target: 5'- uGCAGCUucgggcacggucgcgGCAGCAcCAGCCguuccggacagcgacACGGAAGa -3' miRNA: 3'- uCGUCGA---------------UGUUGUuGUCGG---------------UGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 26086 | 0.69 | 0.843669 |
Target: 5'- aGGCAGaggAgGugGACAGCCugGAGGa -3' miRNA: 3'- -UCGUCga-UgUugUUGUCGGugUUUUc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 17469 | 0.68 | 0.862454 |
Target: 5'- uGGUAGC-GCGcgcGCGGCAGCguCAGAGGu -3' miRNA: 3'- -UCGUCGaUGU---UGUUGUCGguGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 12594 | 0.68 | 0.871403 |
Target: 5'- uGGCccGUUACAACAGCAGCaacguGCAAAc- -3' miRNA: 3'- -UCGu-CGAUGUUGUUGUCGg----UGUUUuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 10541 | 0.68 | 0.888369 |
Target: 5'- -uUAGCUGCGGCucCAGCCugAuccGAGa -3' miRNA: 3'- ucGUCGAUGUUGuuGUCGGugUu--UUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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