miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
681 3' -47.3 AC_000018.1 + 10874 1.11 0.002273
Target:  5'- cAGCAGCUACAACAACAGCCACAAAAGg -3'
miRNA:   3'- -UCGUCGAUGUUGUUGUCGGUGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 9257 0.66 0.942906
Target:  5'- cGCGGCgACGcCGGCGGCgCACGGGcAGa -3'
miRNA:   3'- uCGUCGaUGUuGUUGUCG-GUGUUU-UC- -5'
681 3' -47.3 AC_000018.1 + 2067 0.66 0.942906
Target:  5'- cAGCGGUucUGCAGgAGgAGCaGCAGGAGg -3'
miRNA:   3'- -UCGUCG--AUGUUgUUgUCGgUGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 26533 0.67 0.925014
Target:  5'- aAGaCAGCaGCGACAACGGUgACcAGAAa -3'
miRNA:   3'- -UC-GUCGaUGUUGUUGUCGgUG-UUUUc -5'
681 3' -47.3 AC_000018.1 + 21472 0.67 0.91768
Target:  5'- cAGCAGCUGCAgccaugucauGCGgguccggaaACGGCUccagcgaGCAAGAGc -3'
miRNA:   3'- -UCGUCGAUGU----------UGU---------UGUCGG-------UGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 12594 0.68 0.871403
Target:  5'- uGGCccGUUACAACAGCAGCaacguGCAAAc- -3'
miRNA:   3'- -UCGu-CGAUGUUGUUGUCGg----UGUUUuc -5'
681 3' -47.3 AC_000018.1 + 26086 0.69 0.843669
Target:  5'- aGGCAGaggAgGugGACAGCCugGAGGa -3'
miRNA:   3'- -UCGUCga-UgUugUUGUCGGugUUUUc -5'
681 3' -47.3 AC_000018.1 + 15506 0.69 0.823781
Target:  5'- cAGCAGCUcCGACA--GGCCACu---- -3'
miRNA:   3'- -UCGUCGAuGUUGUugUCGGUGuuuuc -5'
681 3' -47.3 AC_000018.1 + 16194 0.7 0.792107
Target:  5'- cGCGGCUucaggugccaGCAGCGGCAGgucCCGCAGGc- -3'
miRNA:   3'- uCGUCGA----------UGUUGUUGUC---GGUGUUUuc -5'
681 3' -47.3 AC_000018.1 + 4963 0.7 0.781115
Target:  5'- cAGCGGCUuCAGCccguCAGCCAUggGc- -3'
miRNA:   3'- -UCGUCGAuGUUGuu--GUCGGUGuuUuc -5'
681 3' -47.3 AC_000018.1 + 11145 1.11 0.002273
Target:  5'- cAGCAGCUACAACAACAGCCACAAAAGg -3'
miRNA:   3'- -UCGUCGAUGUUGUUGUCGGUGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 3654 0.75 0.494551
Target:  5'- uGCAGCUGCAGCcGCcGCCGCu---- -3'
miRNA:   3'- uCGUCGAUGUUGuUGuCGGUGuuuuc -5'
681 3' -47.3 AC_000018.1 + 10924 0.75 0.506113
Target:  5'- uGCGGCUGCAGCcguCAGCgGCGcgGGa -3'
miRNA:   3'- uCGUCGAUGUUGuu-GUCGgUGUuuUC- -5'
681 3' -47.3 AC_000018.1 + 11195 0.75 0.506113
Target:  5'- uGCGGCUGCAGCcguCAGCgGCGcgGGa -3'
miRNA:   3'- uCGUCGAUGUUGuu-GUCGgUGUuuUC- -5'
681 3' -47.3 AC_000018.1 + 16233 0.73 0.577572
Target:  5'- cGCGGCcacggcgGCAGCAGCGGCCAUu---- -3'
miRNA:   3'- uCGUCGa------UGUUGUUGUCGGUGuuuuc -5'
681 3' -47.3 AC_000018.1 + 26564 0.72 0.675432
Target:  5'- cAGCAGUuagaaaaucUACAACAAguGCaGCAGGAGg -3'
miRNA:   3'- -UCGUCG---------AUGUUGUUguCGgUGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 3716 0.77 0.386638
Target:  5'- cAGCAGUaGCGGCGGCGGCUGCAGc-- -3'
miRNA:   3'- -UCGUCGaUGUUGUUGUCGGUGUUuuc -5'
681 3' -47.3 AC_000018.1 + 17198 0.66 0.937284
Target:  5'- uGguGCUggggGCGGCAACGGgCGCGGGc- -3'
miRNA:   3'- uCguCGA----UGUUGUUGUCgGUGUUUuc -5'
681 3' -47.3 AC_000018.1 + 17739 0.67 0.925014
Target:  5'- uGGC-GCUGCGAgGccugaACcGCCACGGAAGc -3'
miRNA:   3'- -UCGuCGAUGUUgU-----UGuCGGUGUUUUC- -5'
681 3' -47.3 AC_000018.1 + 27703 0.67 0.904038
Target:  5'- aAGCAGCgaaaGCGGCGGCAGUggucuagguguCGCAGucGa -3'
miRNA:   3'- -UCGUCGa---UGUUGUUGUCG-----------GUGUUuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.