Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
681 | 3' | -47.3 | AC_000018.1 | + | 13693 | 0.69 | 0.841729 |
Target: 5'- uGCAGCUucgggcacggucgcgGCAGCAcCAGCCguuccggacagcgacACGGAAGa -3' miRNA: 3'- uCGUCGA---------------UGUUGUuGUCGG---------------UGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 17469 | 0.68 | 0.862454 |
Target: 5'- uGGUAGC-GCGcgcGCGGCAGCguCAGAGGu -3' miRNA: 3'- -UCGUCGaUGU---UGUUGUCGguGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 10541 | 0.68 | 0.888369 |
Target: 5'- -uUAGCUGCGGCucCAGCCugAuccGAGa -3' miRNA: 3'- ucGUCGAUGUUGuuGUCGGugUu--UUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 25640 | 0.68 | 0.891608 |
Target: 5'- gAGCGGUggggugugcaaagauUGCAGCGGCAGUgGCAu--- -3' miRNA: 3'- -UCGUCG---------------AUGUUGUUGUCGgUGUuuuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 3513 | 0.67 | 0.896369 |
Target: 5'- uGGCAGCUGCAA-GACAGaaauuaACAAAAu -3' miRNA: 3'- -UCGUCGAUGUUgUUGUCgg----UGUUUUc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 27703 | 0.67 | 0.904038 |
Target: 5'- aAGCAGCgaaaGCGGCGGCAGUggucuagguguCGCAGucGa -3' miRNA: 3'- -UCGUCGa---UGUUGUUGUCG-----------GUGUUuuC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 17739 | 0.67 | 0.925014 |
Target: 5'- uGGC-GCUGCGAgGccugaACcGCCACGGAAGc -3' miRNA: 3'- -UCGuCGAUGUUgU-----UGuCGGUGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 17198 | 0.66 | 0.937284 |
Target: 5'- uGguGCUggggGCGGCAACGGgCGCGGGc- -3' miRNA: 3'- uCguCGA----UGUUGUUGUCgGUGUUUuc -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 21517 | 0.66 | 0.942906 |
Target: 5'- uGCAGCUGCuGCuuGCAaGaaGCAAGAGg -3' miRNA: 3'- uCGUCGAUGuUGu-UGU-CggUGUUUUC- -5' |
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681 | 3' | -47.3 | AC_000018.1 | + | 3716 | 0.77 | 0.386638 |
Target: 5'- cAGCAGUaGCGGCGGCGGCUGCAGc-- -3' miRNA: 3'- -UCGUCGaUGUUGUUGUCGGUGUUuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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