Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 3' | -53.5 | NC_001875.2 | + | 120830 | 0.66 | 0.945767 |
Target: 5'- uGGGCaGGCACaccaUGGGCACGc----- -3' miRNA: 3'- gCCCGgCCGUGa---ACUCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 1011 | 0.66 | 0.950179 |
Target: 5'- gCGGGCCcGUuCUUGcAGCGCGUg---- -3' miRNA: 3'- -GCCCGGcCGuGAAC-UCGUGCAaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 122130 | 0.66 | 0.945767 |
Target: 5'- uCGGGCgCGGCGCggccGGCGCGc----- -3' miRNA: 3'- -GCCCG-GCCGUGaac-UCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 37882 | 0.66 | 0.945767 |
Target: 5'- gCGGGCCGcGCcagcgGCUUGcuGGCGCGg----- -3' miRNA: 3'- -GCCCGGC-CG-----UGAAC--UCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 110311 | 0.66 | 0.945767 |
Target: 5'- aCGGuGCUGG-ACUgcGGCAUGUUUAUUa -3' miRNA: 3'- -GCC-CGGCCgUGAacUCGUGCAAAUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 26228 | 0.66 | 0.936192 |
Target: 5'- aGGGCCGcGUACcgGGGCAUGg----- -3' miRNA: 3'- gCCCGGC-CGUGaaCUCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 18555 | 0.66 | 0.936192 |
Target: 5'- uGGGCgugGGUGuCUUGAGCGCGcUUUgcGUCg -3' miRNA: 3'- gCCCGg--CCGU-GAACUCGUGC-AAA--UAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 40147 | 0.66 | 0.954345 |
Target: 5'- uGGGCUGGCACc---GCACGg----- -3' miRNA: 3'- gCCCGGCCGUGaacuCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 90680 | 0.66 | 0.950179 |
Target: 5'- gGGGCUGcGCACagucaacgaGGGCACGUUa--- -3' miRNA: 3'- gCCCGGC-CGUGaa-------CUCGUGCAAauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 90036 | 0.66 | 0.955944 |
Target: 5'- gCGGcGCCGGCGCgcgUGccggcggaaaucacaAGCAUGggcGUCa -3' miRNA: 3'- -GCC-CGGCCGUGa--AC---------------UCGUGCaaaUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 92537 | 0.66 | 0.950179 |
Target: 5'- --cGCCGGCACggugUGcAGCGCGcacuuggUGUCg -3' miRNA: 3'- gccCGGCCGUGa---AC-UCGUGCaa-----AUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 124243 | 0.67 | 0.90782 |
Target: 5'- gCGGGCggCGGCACaaUGAcgacaggcgGCGCGUUgGUCg -3' miRNA: 3'- -GCCCG--GCCGUGa-ACU---------CGUGCAAaUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 94671 | 0.67 | 0.931026 |
Target: 5'- uGGGCCaGCGCgc-GGCACGggUGc- -3' miRNA: 3'- gCCCGGcCGUGaacUCGUGCaaAUag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 113955 | 0.67 | 0.90782 |
Target: 5'- -cGGCCGGCACcUGGGUguaaaaguuucGCGUguccGUCa -3' miRNA: 3'- gcCCGGCCGUGaACUCG-----------UGCAaa--UAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 32919 | 0.67 | 0.914001 |
Target: 5'- aGGuGUCGaGCACUuggUGAGCGCGUcaGUUu -3' miRNA: 3'- gCC-CGGC-CGUGA---ACUCGUGCAaaUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 83019 | 0.67 | 0.925605 |
Target: 5'- gCGGcGCCGuaGCGCgcgGAGCAUGUUa--- -3' miRNA: 3'- -GCC-CGGC--CGUGaa-CUCGUGCAAauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 49652 | 0.67 | 0.931026 |
Target: 5'- gCGGccGCCGGCGCccaucGAGCACGa----- -3' miRNA: 3'- -GCC--CGGCCGUGaa---CUCGUGCaaauag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 125179 | 0.67 | 0.925605 |
Target: 5'- aGcGGCCGuugcccagauuGCGCgugcUGGGCACGUUUAg- -3' miRNA: 3'- gC-CCGGC-----------CGUGa---ACUCGUGCAAAUag -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 80130 | 0.67 | 0.914001 |
Target: 5'- uGGGUCGucGCACUcGuGCGCGUcgcugcUUGUCa -3' miRNA: 3'- gCCCGGC--CGUGAaCuCGUGCA------AAUAG- -5' |
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6815 | 3' | -53.5 | NC_001875.2 | + | 93858 | 0.67 | 0.931026 |
Target: 5'- aCGGuuGUCGGCGC-UGAGCGCGc----- -3' miRNA: 3'- -GCC--CGGCCGUGaACUCGUGCaaauag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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